Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_420

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_419: 8787 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 979163 to 981247 8787 mRNA_420: 8788 - K11209 yghU, yfcG GSH-dependent disulfide-bond oxidoreductase, at 981514 to 982786 8788 mRNA_421: 8789 - K11209 yghU, yfcG GSH-dependent disulfide-bond oxidoreductase, at 983035 to 984157 8789

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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980,578 - 8787 mRNA_419 0.68 -1.8
980,696 - 8787 mRNA_419 0.74 -2.4
980,702 + 8787 mRNA_419 0.74 -0.7
980,996 + 8787 mRNA_419 0.88 0.4
981,004 - 8787 mRNA_419 0.88 -3.0
981,013 - 8787 mRNA_419 0.89 -1.3
981,135 + -0.4
981,140 + -0.0
981,141 - -3.7
981,147 + -1.8
981,156 - -0.2
981,158 + -2.9
981,306 + -2.2
981,306 + -3.0
981,440 + -1.5
981,589 + 1.2
981,631 - -2.4
981,875 + 8788 mRNA_420 0.28 0.6
981,882 - 8788 mRNA_420 0.29 0.2
981,984 - 8788 mRNA_420 0.37 -3.4
982,477 - 8788 mRNA_420 0.76 -3.0
982,595 - 8788 mRNA_420 0.85 -0.6
982,629 + 8788 mRNA_420 0.88 -1.5
982,878 + -0.5
982,903 - -2.8
982,924 + -0.4
982,926 - -1.1
982,930 + 0.3
982,941 + -2.1
982,941 - -1.1
982,945 - -0.3
982,971 + -2.9
983,087 - -2.2
983,240 - 8789 mRNA_421 0.18 -2.6
983,369 + 8789 mRNA_421 0.30 -1.5
983,645 + 8789 mRNA_421 0.54 -1.1