Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_419

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_418: 8786 - KOG2308 Phosphatidic acid-preferring phospholipase A1, contains DDHD domain, at 976232 to 979073 8786 mRNA_419: 8787 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 979163 to 981247 8787 mRNA_420: 8788 - K11209 yghU, yfcG GSH-dependent disulfide-bond oxidoreductase, at 981514 to 982786 8788

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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978,189 + 8786 mRNA_418 0.69 -0.6
978,226 + 8786 mRNA_418 0.70 -2.9
978,300 - 8786 mRNA_418 0.73 -2.3
978,782 - 8786 mRNA_418 0.90 -1.0
979,436 + 8787 mRNA_419 0.13 0.2
979,436 + 8787 mRNA_419 0.13 -0.9
979,674 + 8787 mRNA_419 0.25 -1.2
979,717 - 8787 mRNA_419 0.27 -1.6
979,853 + 8787 mRNA_419 0.33 -1.9
980,002 + 8787 mRNA_419 0.40 -0.5
980,280 + 8787 mRNA_419 0.54 -2.2
980,578 - 8787 mRNA_419 0.68 -1.8
980,696 - 8787 mRNA_419 0.74 -2.4
980,702 + 8787 mRNA_419 0.74 -0.7
980,996 + 8787 mRNA_419 0.88 0.4
981,004 - 8787 mRNA_419 0.88 -3.0
981,013 - 8787 mRNA_419 0.89 -1.3
981,135 + -0.4
981,140 + -0.0
981,141 - -3.7
981,147 + -1.8
981,156 - -0.2
981,158 + -2.9
981,306 + -2.2
981,306 + -3.0
981,440 + -1.5
981,589 + 1.2
981,631 - -2.4
981,875 + 8788 mRNA_420 0.28 0.6
981,882 - 8788 mRNA_420 0.29 0.2
981,984 - 8788 mRNA_420 0.37 -3.4