Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_415

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_414: 8782 - KOG4170 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes, at 967662 to 968667 8782 mRNA_415: 8783 - K03511 POLK DNA polymerase kappa, at 969041 to 971775 8783 mRNA_416: 8784 - Hypothetical Protein, at 972046 to 973465 8784

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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968,435 - 8782 mRNA_414 0.77 -1.8
968,435 + 8782 mRNA_414 0.77 -0.7
968,437 - 8782 mRNA_414 0.77 0.1
968,447 - 8782 mRNA_414 0.78 -2.9
968,448 - 8782 mRNA_414 0.78 -0.7
968,455 + 8782 mRNA_414 0.79 -0.5
968,459 + 8782 mRNA_414 0.79 -2.2
968,606 + -0.3
968,643 - -0.0
968,740 - -1.2
968,741 - -0.4
968,749 - -1.3
968,763 + 0.8
968,768 - -0.9
968,769 + -1.1
968,777 + -1.5
968,782 + -2.4
968,790 - 0.2
968,796 - -0.6
968,797 - -1.5
968,797 - -2.3
968,803 + -1.1
968,812 - -2.7
968,813 + 0.0
968,813 + -3.1
968,849 + -2.5
968,863 + -1.1
968,869 + -1.9
968,949 - -1.1
969,325 + 8783 mRNA_415 0.10 -0.6
969,524 - 8783 mRNA_415 0.18 0.1
969,536 + 8783 mRNA_415 0.18 -1.2
969,676 + 8783 mRNA_415 0.23 -0.6
969,796 + 8783 mRNA_415 0.28 -2.6
969,970 - 8783 mRNA_415 0.34 0.1
970,085 + 8783 mRNA_415 0.38 -3.2
970,196 - 8783 mRNA_415 0.42 -0.0
970,209 - 8783 mRNA_415 0.43 1.5
970,212 - 8783 mRNA_415 0.43 -1.0
970,222 - 8783 mRNA_415 0.43 -1.6
970,932 + 8783 mRNA_415 0.69 -1.3
970,933 - 8783 mRNA_415 0.69 -1.4
971,085 - 8783 mRNA_415 0.75 -1.9
971,231 + 8783 mRNA_415 0.80 -1.0
971,406 + 8783 mRNA_415 0.86 -2.8
971,520 - -0.9
971,676 - 0.0
971,794 + -1.1
971,807 - -1.1
971,959 - -3.0
971,972 - -2.4
971,990 - -1.3
972,009 + -2.7
972,230 + 8784 mRNA_416 0.13 -1.0
972,248 - 8784 mRNA_416 0.14 -1.2
972,292 + 8784 mRNA_416 0.17 -2.1
972,396 - 8784 mRNA_416 0.25 -0.5
972,397 + 8784 mRNA_416 0.25 0.1