Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_400

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_399: 8767 - K06874 K06874 zinc finger protein, at 928294 to 930157 8767 mRNA_400: 8768 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 930496 to 933710 8768 mRNA_401: 8769 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 934317 to 936010 8769

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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930,429 + -0.8
930,568 - -3.1
930,689 - -1.7
930,711 + -0.6
930,727 + -1.1
930,882 - 8768 mRNA_400 0.12 -1.7
931,004 + 8768 mRNA_400 0.16 -2.6
931,143 + 8768 mRNA_400 0.20 -3.4
931,149 + 8768 mRNA_400 0.20 -4.7
931,439 - 8768 mRNA_400 0.29 -0.8
931,766 + 8768 mRNA_400 0.40 -3.3
931,904 + 8768 mRNA_400 0.44 -1.2
932,131 - 8768 mRNA_400 0.51 -0.2
932,323 - 8768 mRNA_400 0.57 -2.5
932,585 - 8768 mRNA_400 0.65 -1.2
933,604 - 2.4
933,650 - -1.3
934,046 - -2.4
934,195 + -1.9
934,239 - -3.7
934,255 + -0.4
934,364 - -1.8
934,374 + -2.5
934,380 - -1.1
934,384 + 0.3
934,502 - 8769 mRNA_401 0.11 -1.1
934,530 + 8769 mRNA_401 0.13 -0.9
934,539 - 8769 mRNA_401 0.13 -2.3
934,545 - 8769 mRNA_401 0.13 -0.5