Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_395

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_394: 8762 - KOG0714 Molecular chaperone (DnaJ superfamily), at 916716 to 918157 8762 mRNA_395: 8763 - KOG2262 Sexual differentiation process protein ISP4, at 918678 to 921418 8763 mRNA_396: 8764 - K07478 ycaJ putative ATPase, at 921691 to 924142 8764

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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918,268 - -2.7
918,387 - 0.4
918,397 + -1.5
918,410 - -1.7
918,412 - -2.8
918,437 + -2.0
918,548 + -0.4
918,563 - -2.9
918,692 - -1.5
918,693 - -0.5
918,693 + -1.6
918,713 + -1.0
918,817 + -3.5
918,843 + -2.5
918,994 - 8763 mRNA_395 0.12 -1.8
918,997 - 8763 mRNA_395 0.12 -1.7
919,147 - 8763 mRNA_395 0.17 0.2
919,428 + 8763 mRNA_395 0.27 -1.0
920,162 + 8763 mRNA_395 0.54 -1.8
920,445 - 8763 mRNA_395 0.64 -2.2
920,521 - 8763 mRNA_395 0.67 -1.5
920,584 - 8763 mRNA_395 0.70 -1.3
921,273 - -1.2
921,349 + 0.2
921,462 + -3.1
921,462 + -4.3
921,758 - -2.4
921,779 + -3.4
921,915 + 0.8
921,944 + 8764 mRNA_396 0.10 -1.8
922,038 - 8764 mRNA_396 0.14 -1.1
922,047 - 8764 mRNA_396 0.15 0.0
922,357 - 8764 mRNA_396 0.27 -3.8