Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_376

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_375: 8743 - HMMPfam-Cytidine and deoxycytidylate deaminase zinc-binding region-PF00383,ProSitePatterns-Cytidine and deoxycytidylate deaminases zinc-binding region signature.-PS00903,SUPERFAMILY--SSF53927, at 870783 to 871769 8743 mRNA_376: 8744 - K00381 cysI sulfite reductase (NADPH) hemoprotein beta-component, at 872244 to 876604 8744 mRNA_377: 8745 - KOG1515 Arylacetamide deacetylase, at 876931 to 878832 8745

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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871,374 - 8743 mRNA_375 0.60 -0.3
871,387 - 8743 mRNA_375 0.61 -0.3
871,393 + 8743 mRNA_375 0.62 -2.0
871,839 + -2.3
871,847 + 0.3
871,953 - -0.7
871,979 + -1.3
872,002 - -2.2
872,007 + -0.9
872,101 - 0.3
872,129 - -1.5
872,181 + 0.8
872,202 + -1.1
872,216 + -1.2
872,325 + -3.3
872,326 - -2.5
872,329 - -0.1
872,330 + -0.1
872,335 + -3.4
872,463 + -2.1
872,483 + -1.9
872,503 + -1.6
872,608 - -2.6
872,763 + 8744 mRNA_376 0.12 -0.3
872,920 + 8744 mRNA_376 0.16 0.8
872,931 + 8744 mRNA_376 0.16 -2.3
873,387 + 8744 mRNA_376 0.26 -1.0
873,502 - 8744 mRNA_376 0.29 -3.6
873,698 - 8744 mRNA_376 0.33 -0.9
874,442 - 8744 mRNA_376 0.50 -0.1
875,027 + 8744 mRNA_376 0.64 -0.7
875,159 + 8744 mRNA_376 0.67 -1.0
875,238 + 8744 mRNA_376 0.69 -1.5
875,387 - 8744 mRNA_376 0.72 -2.6
875,981 + 8744 mRNA_376 0.86 -0.3
876,104 + 8744 mRNA_376 0.89 -0.5
876,104 - 8744 mRNA_376 0.89 -1.7
876,393 - 0.9
876,401 - -2.1
876,651 - -1.9
876,686 + -3.8
876,824 - -3.5
876,878 - -1.2
876,911 + -1.6
876,985 + -1.7
877,003 - -0.9
877,097 - -1.2
877,181 - 8745 mRNA_377 0.13 -1.1
877,403 + 8745 mRNA_377 0.25 -0.5