Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_375

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_374: 8742 - Hypothetical Protein, at 869694 to 870348 8742 mRNA_375: 8743 - HMMPfam-Cytidine and deoxycytidylate deaminase zinc-binding region-PF00383,ProSitePatterns-Cytidine and deoxycytidylate deaminases zinc-binding region signature.-PS00903,SUPERFAMILY--SSF53927, at 870783 to 871769 8743 mRNA_376: 8744 - K00381 cysI sulfite reductase (NADPH) hemoprotein beta-component, at 872244 to 876604 8744

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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869,795 + 8742 mRNA_374 0.15 0.1
870,258 - 8742 mRNA_374 0.86 2.0
870,366 - -1.6
870,385 - -1.2
870,386 + -2.0
870,402 - -1.0
870,409 - -1.3
870,519 - -0.5
870,539 - -1.9
870,550 + -0.7
870,677 + -3.5
870,808 - -4.6
870,818 - -1.9
870,847 - -1.8
870,855 + -3.4
870,981 + 8743 mRNA_375 0.20 -1.2
871,374 - 8743 mRNA_375 0.60 -0.3
871,387 - 8743 mRNA_375 0.61 -0.3
871,393 + 8743 mRNA_375 0.62 -2.0
871,839 + -2.3
871,847 + 0.3
871,953 - -0.7
871,979 + -1.3
872,002 - -2.2
872,007 + -0.9
872,101 - 0.3
872,129 - -1.5
872,181 + 0.8
872,202 + -1.1
872,216 + -1.2
872,325 + -3.3
872,326 - -2.5
872,329 - -0.1
872,330 + -0.1
872,335 + -3.4
872,463 + -2.1
872,483 + -1.9
872,503 + -1.6
872,608 - -2.6
872,763 + 8744 mRNA_376 0.12 -0.3