Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_373

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_372: 8740 - BLAST arsenical pump membrane protein [Exophiala dermat..., at 864831 to 866823 8740 mRNA_373: 8741 - KOG2542 Uncharacterized conserved protein (YdiU family), at 866989 to 869456 8741 mRNA_374: 8742 - Hypothetical Protein, at 869694 to 870348 8742

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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866,565 - 8740 mRNA_372 0.87 2.0
866,689 - -1.1
866,694 - -0.7
866,701 + -0.7
866,710 - -1.1
866,715 + -0.8
866,723 + 0.0
866,725 + -0.1
866,856 - -0.2
866,857 + 0.8
866,861 + -1.3
866,862 + -1.5
866,866 - -3.1
866,871 + 0.3
866,872 - -3.3
866,872 - -1.5
866,872 - -2.9
866,872 - -2.7
866,874 + -0.7
866,878 + -2.3
866,883 - -0.5
866,890 - -0.7
866,894 + -1.0
867,004 - -3.0
867,014 - 0.2
867,015 - -0.6
867,020 + -1.2
867,022 - -2.6
867,027 - -1.8
867,030 - -0.7
867,034 + -1.5
867,038 + -1.2
867,043 - -1.2
867,054 - -1.1
867,162 + -1.9
867,181 - -1.6
867,451 - 8741 mRNA_373 0.19 -2.7
867,484 + 8741 mRNA_373 0.20 -1.1
867,647 - 8741 mRNA_373 0.27 -2.6
867,905 + 8741 mRNA_373 0.37 -1.0
867,919 + 8741 mRNA_373 0.38 -2.2
868,081 + 8741 mRNA_373 0.44 -1.7
868,179 - 8741 mRNA_373 0.48 -2.0
868,351 + 8741 mRNA_373 0.55 -1.5
868,369 - 8741 mRNA_373 0.56 -1.5
868,643 + 8741 mRNA_373 0.67 -0.8
868,812 + 8741 mRNA_373 0.74 -2.4
868,928 - 8741 mRNA_373 0.79 -0.3
869,218 + -3.2
869,383 + -2.2
869,795 + 8742 mRNA_374 0.15 0.1
870,258 - 8742 mRNA_374 0.86 2.0
870,366 - -1.6
870,385 - -1.2
870,386 + -2.0
870,402 - -1.0
870,409 - -1.3