Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_370

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_369: 8737 - K20309 TRAPPC12 trafficking protein particle complex subunit 12, at 857232 to 859087 8737 mRNA_370: 8738 - HMMPfam-RTC4-like domain-PF14474, at 859391 to 862171 8738 mRNA_371: 8739 - HMMPfam-Protein of unknown function (DUF2408)-PF10303, at 862374 to 864566 8739

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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858,399 - 8737 mRNA_369 0.63 -1.1
858,720 + 8737 mRNA_369 0.80 -0.8
859,014 - 0.6
859,174 - -1.5
859,178 + -2.7
859,181 + -1.5
859,183 + -0.8
859,186 + -0.0
859,285 + -0.9
859,329 - 0.3
859,343 + -2.1
859,448 - -0.2
859,599 + -1.2
859,878 - 8738 mRNA_370 0.18 -2.4
859,900 + 8738 mRNA_370 0.18 -0.2
859,954 - 8738 mRNA_370 0.20 -1.8
860,326 + 8738 mRNA_370 0.34 -2.0
860,343 - 8738 mRNA_370 0.34 0.5
860,926 + 8738 mRNA_370 0.55 -2.4
861,079 + 8738 mRNA_370 0.61 -2.0
861,119 - 8738 mRNA_370 0.62 -2.0
861,324 + 8738 mRNA_370 0.70 -1.3
861,343 - 8738 mRNA_370 0.70 -1.7
861,376 + 8738 mRNA_370 0.71 -1.1
861,801 - 8738 mRNA_370 0.87 -1.6
861,806 - 8738 mRNA_370 0.87 -2.4
861,906 + -0.5
862,391 - -0.8
862,676 - 8739 mRNA_371 0.14 -1.7
862,771 - 8739 mRNA_371 0.18 -3.2
862,861 - 8739 mRNA_371 0.22 -1.7
863,131 + 8739 mRNA_371 0.35 0.9