Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_369

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_368: 8736 - KOG2100 Dipeptidyl aminopeptidase, at 853834 to 856786 8736 mRNA_369: 8737 - K20309 TRAPPC12 trafficking protein particle complex subunit 12, at 857232 to 859087 8737 mRNA_370: 8738 - HMMPfam-RTC4-like domain-PF14474, at 859391 to 862171 8738

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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856,522 - -1.1
856,539 + -0.5
856,548 - -1.7
856,554 + -2.3
856,668 - -2.3
856,695 - -2.1
856,775 + -1.6
856,798 - -2.0
856,823 + -1.5
856,823 + -2.1
856,827 + -2.7
856,854 + -1.2
856,954 + 0.1
856,954 + -4.4
856,972 - -2.0
856,977 + -0.6
856,988 + -3.7
856,992 + -0.7
856,992 - -1.0
857,010 - -1.8
857,017 - -2.6
857,029 + -1.1
857,053 - -0.2
857,055 - -2.8
857,072 + 0.6
857,075 - -1.5
857,115 - -0.5
857,131 + -1.3
857,165 + -1.9
857,165 + -2.3
857,170 - 0.7
857,367 + -0.2
857,391 + -1.5
857,683 + 8737 mRNA_369 0.24 -3.2
858,116 - 8737 mRNA_369 0.48 -1.8
858,121 - 8737 mRNA_369 0.48 -0.8
858,298 + 8737 mRNA_369 0.57 -0.6
858,399 - 8737 mRNA_369 0.63 -1.1
858,720 + 8737 mRNA_369 0.80 -0.8
859,014 - 0.6
859,174 - -1.5
859,178 + -2.7
859,181 + -1.5
859,183 + -0.8
859,186 + -0.0
859,285 + -0.9
859,329 - 0.3
859,343 + -2.1
859,448 - -0.2
859,599 + -1.2
859,878 - 8738 mRNA_370 0.18 -2.4
859,900 + 8738 mRNA_370 0.18 -0.2
859,954 - 8738 mRNA_370 0.20 -1.8