Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_368

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_367: 8735 - ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 850981 to 853734 8735 mRNA_368: 8736 - KOG2100 Dipeptidyl aminopeptidase, at 853834 to 856786 8736 mRNA_369: 8737 - K20309 TRAPPC12 trafficking protein particle complex subunit 12, at 857232 to 859087 8737

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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853,299 + 8735 mRNA_367 0.84 -1.1
853,611 - -0.4
854,038 + 0.4
854,069 + 0.2
854,183 - 8736 mRNA_368 0.12 -2.0
854,317 + 8736 mRNA_368 0.16 -4.3
854,802 + 8736 mRNA_368 0.33 -1.7
854,809 + 8736 mRNA_368 0.33 0.8
855,079 - 8736 mRNA_368 0.42 1.2
855,657 - 8736 mRNA_368 0.62 -3.0
855,665 - 8736 mRNA_368 0.62 -0.9
855,784 - 8736 mRNA_368 0.66 -3.0
855,976 - 8736 mRNA_368 0.73 -0.1
855,985 + 8736 mRNA_368 0.73 -0.1
856,108 - 8736 mRNA_368 0.77 -1.5
856,136 - 8736 mRNA_368 0.78 0.5
856,522 - -1.1
856,539 + -0.5
856,548 - -1.7
856,554 + -2.3
856,668 - -2.3
856,695 - -2.1
856,775 + -1.6
856,798 - -2.0
856,823 + -1.5
856,823 + -2.1
856,827 + -2.7
856,854 + -1.2
856,954 + 0.1
856,954 + -4.4
856,972 - -2.0
856,977 + -0.6
856,988 + -3.7
856,992 + -0.7
856,992 - -1.0
857,010 - -1.8
857,017 - -2.6
857,029 + -1.1
857,053 - -0.2
857,055 - -2.8
857,072 + 0.6
857,075 - -1.5
857,115 - -0.5
857,131 + -1.3
857,165 + -1.9
857,165 + -2.3
857,170 - 0.7
857,367 + -0.2
857,391 + -1.5
857,683 + 8737 mRNA_369 0.24 -3.2