Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_358

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_357: 8725 - K01556 KYNU, kynU kynureninase, at 833952 to 835830 8725 mRNA_358: 8726 - KOG1515 Arylacetamide deacetylase, at 836164 to 837965 8726 mRNA_359: 8727 - BLAST minor histocompatibility antigen H13 [Kwoniella d..., at 838218 to 839816 8727

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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835,177 - 8725 mRNA_357 0.65 -0.5
835,216 + 8725 mRNA_357 0.67 -2.7
835,343 - 8725 mRNA_357 0.74 -1.2
835,499 + 8725 mRNA_357 0.82 -0.7
835,724 - -0.9
835,750 - -2.1
835,759 - -1.1
835,762 - -3.7
835,899 - -1.9
835,901 + -1.2
835,915 + -3.5
835,918 - -2.1
836,049 - -1.3
836,052 + -1.0
836,059 + -1.5
836,070 - 0.1
836,194 + -3.2
836,466 + 8726 mRNA_358 0.17 -3.7
836,903 - 8726 mRNA_358 0.41 -2.9
837,175 - 8726 mRNA_358 0.56 -3.7
837,317 + 8726 mRNA_358 0.64 -1.3
837,599 - 8726 mRNA_358 0.80 0.2
837,609 + 8726 mRNA_358 0.80 -1.3
837,899 - -1.7
838,049 - -2.2
838,075 + -0.9
838,186 - -1.9
838,231 + -0.2
838,327 + -0.6
838,338 + 0.1
838,341 - -0.4
838,349 + -0.9
838,633 - 8727 mRNA_359 0.26 -1.2
838,666 - 8727 mRNA_359 0.28 -1.2
838,752 - 8727 mRNA_359 0.33 -0.7
838,926 - 8727 mRNA_359 0.44 -0.5