Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_357

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_356: 8724 - K02727 PSMA3 20S proteasome subunit alpha 7, at 832333 to 833691 8724 mRNA_357: 8725 - K01556 KYNU, kynU kynureninase, at 833952 to 835830 8725 mRNA_358: 8726 - KOG1515 Arylacetamide deacetylase, at 836164 to 837965 8726

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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833,804 - -1.2
833,808 - -2.3
833,810 - -1.4
833,813 - -3.3
833,826 - -2.1
833,829 + -0.9
833,830 - -2.6
833,832 - -0.5
833,836 - -3.5
833,838 + -0.1
833,844 - -1.8
833,853 + 0.5
833,991 + -3.1
834,028 - -1.0
834,448 + 8725 mRNA_357 0.26 -0.9
834,722 - 8725 mRNA_357 0.41 -3.6
834,730 + 8725 mRNA_357 0.41 -2.4
834,763 - 8725 mRNA_357 0.43 0.4
835,177 - 8725 mRNA_357 0.65 -0.5
835,216 + 8725 mRNA_357 0.67 -2.7
835,343 - 8725 mRNA_357 0.74 -1.2
835,499 + 8725 mRNA_357 0.82 -0.7
835,724 - -0.9
835,750 - -2.1
835,759 - -1.1
835,762 - -3.7
835,899 - -1.9
835,901 + -1.2
835,915 + -3.5
835,918 - -2.1
836,049 - -1.3
836,052 + -1.0
836,059 + -1.5
836,070 - 0.1
836,194 + -3.2
836,466 + 8726 mRNA_358 0.17 -3.7