Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_351

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_350: 8718 - K17439 MRPL35 large subunit ribosomal protein L35, at 819201 to 820840 8718 mRNA_351: 8719 - BLAST carbohydrate-binding module family 13 protein [Rhizoc..., at 821227 to 823466 8719 mRNA_352: 8720 - K14298 RAE1, GLE2 mRNA export factor, at 823972 to 825872 8720

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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820,710 - -1.2
820,725 + 0.1
820,729 - -0.2
820,730 - -3.3
820,750 - -2.0
820,865 + -1.7
820,879 - -0.5
820,894 - -4.1
820,899 - -1.3
820,900 + -0.6
820,925 - 0.2
820,925 - -2.3
820,925 + -0.5
820,951 + 1.6
820,960 - -3.7
820,967 - -3.5
820,973 + -2.0
820,992 + -3.6
820,997 - 0.2
820,998 - 0.4
821,013 + 0.1
821,014 - -1.3
821,017 - -0.1
821,019 - -1.6
821,019 + -3.6
821,048 - -2.2
821,055 - 0.0
821,057 + 0.1
821,064 + -2.5
821,071 + -1.9
821,074 + -1.5
821,075 - -4.0
821,182 - -0.2
821,209 + 0.4
821,211 - 0.3
821,213 - -3.7
821,213 - -2.6
821,215 + -1.8
821,222 + -1.3
821,224 - -0.0
821,225 + -1.4
821,367 + -1.2
821,392 + -1.9
821,401 + -1.9
821,415 + -1.2
821,441 - -1.0
821,442 + -1.1
821,443 - -1.7
821,496 + 8719 mRNA_351 0.12 -0.8
821,501 - 8719 mRNA_351 0.12 -1.0
821,522 + 8719 mRNA_351 0.13 -0.9
821,568 + 8719 mRNA_351 0.15 -0.9
821,623 - 8719 mRNA_351 0.18 -1.8
821,819 - 8719 mRNA_351 0.26 -1.3
821,958 - 8719 mRNA_351 0.33 -0.9
821,991 - 8719 mRNA_351 0.34 -1.5
822,246 + 8719 mRNA_351 0.45 -1.1
822,486 - 8719 mRNA_351 0.56 -2.2
822,520 + 8719 mRNA_351 0.58 -1.0
823,502 - -2.2
823,571 - -0.7
823,796 - -1.7
823,838 - 0.9
823,981 - -0.5
823,984 + 1.1