Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_346

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_345: 8713 - HMMPfam-Mis12-Mtw1 protein family-PF08202, at 807833 to 810278 8713 mRNA_346: 8714 - KOG3113 Uncharacterized conserved protein, at 810935 to 812073 8714 mRNA_347: 8715 - K01358 clpP, CLPP ATP-dependent Clp protease, protease subunit, at 812263 to 813594 8715

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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810,286 + -0.9
810,289 - 0.0
810,290 - 1.0
810,292 + -1.1
810,313 + -0.9
810,328 - 0.2
810,410 - -2.5
810,436 - -1.1
810,452 + -1.1
810,460 + -1.7
810,461 + -2.3
810,598 - -0.8
810,603 + -2.8
810,614 + -0.5
810,746 - -3.8
810,893 - -0.1
810,900 - -1.9
810,903 + -0.8
811,779 - 8714 mRNA_346 0.74 -0.6
811,936 + 8714 mRNA_346 0.88 -1.4
812,083 + -3.0
812,210 - -2.0
812,408 - 8715 mRNA_347 0.11 -1.7
812,431 + 8715 mRNA_347 0.13 -1.6
812,504 - 8715 mRNA_347 0.18 -1.8
812,505 + 8715 mRNA_347 0.18 0.1
812,507 + 8715 mRNA_347 0.18 -0.5
812,524 - 8715 mRNA_347 0.20 -0.4
812,532 + 8715 mRNA_347 0.20 -0.6
812,535 + 8715 mRNA_347 0.20 -2.0
812,917 - 8715 mRNA_347 0.49 -2.1
812,959 - 8715 mRNA_347 0.52 -1.6
812,966 + 8715 mRNA_347 0.53 -0.7