Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_315

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_314: 8682 - K13091 RBM39, RNPC2 RNA-binding protein 39, at 749609 to 751814 8682 mRNA_315: 8683 - Hypothetical Protein, at 752039 to 753953 8683 mRNA_316: 8684 - K18802 DUG3 glutamine amidotransferase, at 754275 to 756026 8684

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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751,422 + 8682 mRNA_314 0.82 1.1
751,689 - -1.7
751,708 - -1.6
751,711 - 0.5
751,713 + -1.9
751,716 + -0.6
751,836 - -2.4
751,838 - -4.0
751,843 - 2.1
751,844 - -2.5
751,849 + -0.3
751,850 - -0.7
751,874 + -2.5
751,875 + -2.7
751,980 + -1.9
751,987 - -2.2
752,009 + -2.7
752,009 - -0.5
752,010 + -1.9
752,031 + -2.0
752,032 - -1.6
752,041 - -0.7
752,049 + -2.9
752,050 + -1.1
752,061 + -2.2
752,067 - 0.2
752,069 + -1.4
752,069 - -2.8
752,081 + -0.7
752,084 + -1.3
752,086 + -1.9
752,088 + -1.7
752,100 + -0.6
752,112 + -1.4
752,123 + -3.8
752,134 + -2.8
752,142 - -2.8
752,157 - -1.4
752,161 + -2.2
752,161 + -1.4
752,162 - -4.1
752,175 - -1.8
752,189 + -1.8
752,191 + -1.5
752,192 + -1.7
752,192 + -0.9
752,212 + -1.0
752,213 - -1.2
752,227 - -1.4
752,272 + 8683 mRNA_315 0.12 -1.7
752,274 - 8683 mRNA_315 0.12 -1.1
752,283 + 8683 mRNA_315 0.13 -1.9
752,288 - 8683 mRNA_315 0.13 -2.1
752,293 + 8683 mRNA_315 0.13 -2.1
752,295 - 8683 mRNA_315 0.13 -2.9
752,305 - 8683 mRNA_315 0.14 -2.2
752,313 - 8683 mRNA_315 0.14 -3.5
752,315 - 8683 mRNA_315 0.14 -1.8
752,327 + 8683 mRNA_315 0.15 -1.4
752,349 - 8683 mRNA_315 0.16 -1.2
752,354 - 8683 mRNA_315 0.16 0.2
752,362 + 8683 mRNA_315 0.17 -1.4
752,389 + 8683 mRNA_315 0.18 -1.5
752,393 + 8683 mRNA_315 0.18 -2.9
752,404 + 8683 mRNA_315 0.19 1.3
752,416 - 8683 mRNA_315 0.20 0.3
752,424 + 8683 mRNA_315 0.20 0.2
752,424 - 8683 mRNA_315 0.20 -1.5
752,444 - 8683 mRNA_315 0.21 -3.5
752,448 + 8683 mRNA_315 0.21 -1.0
752,463 + 8683 mRNA_315 0.22 -0.6
752,503 - 8683 mRNA_315 0.24 -2.1
752,629 - 8683 mRNA_315 0.31 -2.0
752,662 - 8683 mRNA_315 0.33 1.1
752,692 - 8683 mRNA_315 0.34 -1.2
752,748 + 8683 mRNA_315 0.37 -1.1
752,874 + 8683 mRNA_315 0.44 -0.9
753,201 - 8683 mRNA_315 0.61 -1.7
753,324 + 8683 mRNA_315 0.67 -2.8
753,345 - 8683 mRNA_315 0.68 -1.1
753,476 - 8683 mRNA_315 0.75 -1.4
753,607 - 8683 mRNA_315 0.82 -1.5
753,763 + -2.0
754,049 + -2.6
754,060 + -0.6
754,194 - -1.7
754,208 + -0.8
754,469 - 8684 mRNA_316 0.11 -1.8
754,502 - 8684 mRNA_316 0.13 -3.3
754,505 + 8684 mRNA_316 0.13 1.6
754,652 + 8684 mRNA_316 0.22 -1.4
754,764 - 8684 mRNA_316 0.28 0.3
754,897 - 8684 mRNA_316 0.36 -0.6