Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_267

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_266: 8634 - KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, at 639859 to 640522 8634 mRNA_267: 8635 - K03381 catA catechol 1,2-dioxygenase, at 640868 to 642235 8635 mRNA_268: 8636 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 642489 to 643919 8636

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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639,879 - -0.7
640,023 - 8634 mRNA_266 0.25 -1.1
640,581 - 0.9
640,584 + -0.8
640,589 - -1.5
640,598 + -2.8
641,347 + 8635 mRNA_267 0.35 -0.8
641,430 + 8635 mRNA_267 0.41 1.3
641,868 + 8635 mRNA_267 0.73 -0.9
642,177 + -1.6
642,303 + 0.5
642,319 - -1.4
642,355 + -0.5
642,419 - -0.1
642,422 + -2.8
642,423 + 0.5
642,427 - -2.1
642,432 + -0.4
642,432 + 0.1
642,581 - -0.5
642,926 + 8636 mRNA_268 0.31 -0.6
643,064 + 8636 mRNA_268 0.40 -1.8