Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_252

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_250: 8618 - K19245 JLP1 sulfonate dioxygenase, at 607313 to 608781 8618 mRNA_251: 8619 - HMMPfam-ACT domain-PF13840,PIRSF--PIRSF008459,SUPERFAMILY--SSF55021, at 608918 to 609439 8619 mRNA_252: 8620 - Hypothetical Protein, at 609608 to 610870 8620 mRNA_253: 8621 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 611030 to 612229 8621

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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608,627 - 8618 mRNA_250 0.89 -1.2
608,633 + 8618 mRNA_250 0.90 -0.8
608,925 + -0.5
609,181 - 8619 mRNA_251 0.50 -3.4
609,190 + 8619 mRNA_251 0.52 -3.0
609,356 - 8619 mRNA_251 0.84 -1.9
609,358 - 8619 mRNA_251 0.84 -0.8
609,376 - 8619 mRNA_251 0.88 -2.2
609,487 - -1.9
609,496 + -0.4
609,498 - -2.4
609,498 + -2.5
609,573 + -1.8
609,642 - -2.6
609,652 - -2.2
609,667 + -0.7
609,695 + 0.1
609,958 + 8620 mRNA_252 0.28 -0.2
609,963 + 8620 mRNA_252 0.28 -0.3
610,016 + 8620 mRNA_252 0.32 -1.5
610,018 - 8620 mRNA_252 0.32 -1.0
610,292 - 8620 mRNA_252 0.54 -0.6
610,525 - 8620 mRNA_252 0.73 -0.7
610,659 - 8620 mRNA_252 0.83 -1.2
610,665 + 8620 mRNA_252 0.84 -1.0
610,668 - 8620 mRNA_252 0.84 -1.6
610,680 + 8620 mRNA_252 0.85 -1.0
610,817 + 0.5
610,817 - 0.4
610,827 + -0.5
610,914 - -0.7
610,958 - -1.7
610,960 - -1.2
610,966 - -1.3
610,979 + -0.5
610,987 + -0.8
611,122 - -0.5
611,134 + -1.4
611,134 - -1.0
611,710 + 8621 mRNA_253 0.57 -1.1
611,712 + 8621 mRNA_253 0.57 -2.8
611,728 + 8621 mRNA_253 0.58 -1.6
611,837 - 8621 mRNA_253 0.67 -2.0