Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_246

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_245: 8613 - KOG0256 1-aminocyclopropane-1-carboxylate synthase, and related proteins, at 597112 to 598781 8613 mRNA_246: 8614 - Hypothetical Protein, at 598851 to 601414 8614 mRNA_247: 8615 - K11254 H4 histone H4, at 602212 to 602729 8615

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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598,124 + 8613 mRNA_245 0.61 -0.8
598,145 + 8613 mRNA_245 0.62 -3.1
598,299 + 8613 mRNA_245 0.71 -0.5
598,386 - 8613 mRNA_245 0.76 -0.5
598,939 - -0.3
598,969 - 0.5
598,971 + -2.1
598,974 - -0.9
598,987 - 1.6
598,988 - -2.6
599,002 + -3.2
599,034 + -0.5
599,094 + -1.6
599,130 - 8614 mRNA_246 0.11 0.1
599,148 + 8614 mRNA_246 0.12 -0.3
599,153 - 8614 mRNA_246 0.12 -0.5
599,153 - 8614 mRNA_246 0.12 -1.6
599,153 - 8614 mRNA_246 0.12 0.9
599,154 + 8614 mRNA_246 0.12 -1.1
599,154 + 8614 mRNA_246 0.12 -0.1
599,166 + 8614 mRNA_246 0.12 -1.3
599,167 - 8614 mRNA_246 0.12 -3.6
599,167 - 8614 mRNA_246 0.12 -1.0
599,172 + 8614 mRNA_246 0.13 -1.2
599,173 + 8614 mRNA_246 0.13 -1.6
599,176 - 8614 mRNA_246 0.13 -0.7
599,177 + 8614 mRNA_246 0.13 -0.2
599,177 + 8614 mRNA_246 0.13 -1.1
599,178 - 8614 mRNA_246 0.13 -0.3
599,183 - 8614 mRNA_246 0.13 -0.7
599,185 - 8614 mRNA_246 0.13 -3.1
599,187 + 8614 mRNA_246 0.13 -0.3
599,187 - 8614 mRNA_246 0.13 -0.8
599,190 + 8614 mRNA_246 0.13 0.1
599,195 - 8614 mRNA_246 0.13 -1.6
599,201 + 8614 mRNA_246 0.14 -1.4
599,201 + 8614 mRNA_246 0.14 -1.4
599,201 + 8614 mRNA_246 0.14 0.0
599,201 + 8614 mRNA_246 0.14 -0.8
599,201 + 8614 mRNA_246 0.14 -2.3
599,201 - 8614 mRNA_246 0.14 -0.6
599,202 + 8614 mRNA_246 0.14 -0.7
599,207 - 8614 mRNA_246 0.14 -1.9
599,211 + 8614 mRNA_246 0.14 -3.2
599,213 + 8614 mRNA_246 0.14 -2.2
599,218 + 8614 mRNA_246 0.14 0.1
599,223 + 8614 mRNA_246 0.15 0.1
599,228 - 8614 mRNA_246 0.15 0.2
599,254 + 8614 mRNA_246 0.16 -2.5
599,324 - 8614 mRNA_246 0.18 -2.4
599,330 + 8614 mRNA_246 0.19 0.2
599,333 + 8614 mRNA_246 0.19 -3.0
599,551 + 8614 mRNA_246 0.27 -1.9
599,554 - 8614 mRNA_246 0.27 0.2
599,617 - 8614 mRNA_246 0.30 -1.3
599,668 + 8614 mRNA_246 0.32 -2.0
599,731 + 8614 mRNA_246 0.34 0.4
599,734 + 8614 mRNA_246 0.34 -0.2
599,744 + 8614 mRNA_246 0.35 -3.8
599,747 - 8614 mRNA_246 0.35 -1.1
599,904 + 8614 mRNA_246 0.41 -2.3
600,211 + 8614 mRNA_246 0.53 -2.8
600,781 + 8614 mRNA_246 0.75 0.1
601,092 + 8614 mRNA_246 0.87 -2.2
601,207 + -0.9
601,218 + -0.8
601,337 - -0.7
601,350 + 0.3
601,479 + -1.9
601,497 + -1.8
601,501 + -3.4
601,506 + -0.5
601,506 + -2.0
601,506 + -1.2
601,509 + -1.7
601,513 - -2.5
601,515 + -1.9
601,653 + -0.9
601,779 - 1.0
601,843 - -3.9
601,844 - -0.1
601,845 + 0.4
601,851 - -2.7
601,852 - -1.7
601,852 + 0.0
601,853 + 0.3
601,853 + -1.2
601,860 + -0.3
601,895 - -2.9
601,903 - -2.2
602,006 + -1.2
602,007 + -3.4
602,062 - -0.9
602,164 + -2.4
602,178 + -3.7