Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_217

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_216: 8584 - BLAST protein of choline transporter-like family [Rhodo..., at 534909 to 538209 8584 mRNA_217: 8585 - K02292 crtO beta-carotene ketolase (CrtO type), at 538550 to 540960 8585 mRNA_218: 8586 - Hypothetical Protein, at 540999 to 541232 8586 mRNA_219: 8587 - Hypothetical Protein, at 541631 to 542423 8587

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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537,839 - 8584 mRNA_216 0.89 -3.0
537,843 + 8584 mRNA_216 0.89 -1.5
537,845 - 8584 mRNA_216 0.89 0.8
537,886 + -1.8
538,098 - -1.5
538,514 + -0.9
538,819 + 8585 mRNA_217 0.11 -0.8
539,117 - 8585 mRNA_217 0.24 -0.1
539,416 - 8585 mRNA_217 0.36 -2.2
539,548 - 8585 mRNA_217 0.41 -2.7
539,697 + 8585 mRNA_217 0.48 -1.0
540,693 - 8585 mRNA_217 0.89 -3.3
540,709 + 8585 mRNA_217 0.90 -0.1
540,843 - 0.5
540,854 + -2.2
540,891 + -0.9
540,970 + -0.8
540,991 - -0.9
540,992 + -0.1
540,996 + -0.2
540,998 - -1.7
541,021 - -0.3
541,024 + 8586 mRNA_218 0.11 -2.3
541,031 + 8586 mRNA_218 0.14 -1.4
541,041 + 8586 mRNA_218 0.18 -0.2
541,053 + 8586 mRNA_218 0.23 -4.0
541,054 + 8586 mRNA_218 0.24 -1.9
541,061 - 8586 mRNA_218 0.26 -0.3
541,065 - 8586 mRNA_218 0.28 -1.8
541,065 - 8586 mRNA_218 0.28 -0.9
541,078 - 8586 mRNA_218 0.34 0.3
541,084 + 8586 mRNA_218 0.36 0.4
541,113 + 8586 mRNA_218 0.49 -0.6
541,127 + 8586 mRNA_218 0.55 -0.9
541,165 + 8586 mRNA_218 0.71 -2.9
541,195 - 8586 mRNA_218 0.84 -1.9
541,302 - -0.6
541,459 - -1.8