Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_199

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_198: 8566 - K02952 RP-S13, rpsM small subunit ribosomal protein S13, at 485103 to 485929 8566 mRNA_199: 8567 - Hypothetical Protein, at 486367 to 488620 8567 mRNA_200: 8568 - K15541 MPE1 protein MPE1, at 489424 to 492149 8568

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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486,175 - -3.1
486,178 - -3.6
486,186 + -2.2
486,191 + -1.6
486,196 + -1.5
486,198 + -2.1
486,218 - -1.1
486,402 - -2.2
486,484 - -1.5
486,640 + 8567 mRNA_199 0.12 -0.1
486,760 + 8567 mRNA_199 0.17 -0.6
487,369 + 8567 mRNA_199 0.44 -2.3
487,493 - 8567 mRNA_199 0.50 -2.4
487,514 - 8567 mRNA_199 0.51 -1.8
487,534 + 8567 mRNA_199 0.52 -1.4
487,658 - 8567 mRNA_199 0.57 0.1
487,670 - 8567 mRNA_199 0.58 -1.2
487,817 + 8567 mRNA_199 0.64 0.5
487,845 + 8567 mRNA_199 0.66 -2.5
487,966 - 8567 mRNA_199 0.71 -2.0
487,981 + 8567 mRNA_199 0.72 -1.5
487,998 + 8567 mRNA_199 0.72 -0.5
488,138 + 8567 mRNA_199 0.79 -1.0
488,241 - 8567 mRNA_199 0.83 -1.1
488,243 - 8567 mRNA_199 0.83 0.1
488,455 - -0.1
488,854 - -3.7
488,859 - -1.4
488,873 - -2.7
488,873 - -0.3
488,896 + -2.2
488,983 + -1.6
489,000 - -4.6
489,141 - -3.2
489,280 - -1.0
489,291 - -1.5
489,298 + -1.4
489,308 + 0.0
489,308 + -0.7
489,310 - 0.0
489,322 + -3.1
489,484 + -2.6
489,591 - -1.7