Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_175

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_174: 8542 - HMMPfam-Glyoxal oxidase N-terminus-PF07250,HMMPfam-Domain of unknown function (DUF1929)-PF09118,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF81296, at 426426 to 428792 8542 mRNA_175: 8543 - KOG2533 Permease of the major facilitator superfamily, at 429470 to 431854 8543 mRNA_176: 8544 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 432530 to 433945 8544

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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428,550 + 8542 mRNA_174 0.90 -0.8
429,227 + -3.1
429,967 - 8543 mRNA_175 0.21 -0.8
430,153 + 8543 mRNA_175 0.29 -1.7
430,560 - 8543 mRNA_175 0.46 0.2
430,592 + 8543 mRNA_175 0.47 -1.2
430,975 + 8543 mRNA_175 0.63 -2.8
431,077 - 8543 mRNA_175 0.67 -1.8
431,168 + 8543 mRNA_175 0.71 -1.6
431,348 - 8543 mRNA_175 0.79 -1.7
431,449 - 8543 mRNA_175 0.83 -1.9
431,611 + 8543 mRNA_175 0.90 -1.8
431,682 + -0.4
431,765 + -0.6
431,780 - -0.5
431,801 - -1.2
431,802 + -1.1
431,817 - -0.1
431,839 + -1.0
431,942 + 1.3
431,952 - -2.2
431,964 + -4.5
431,969 + -2.5
431,969 - -0.1
431,973 + -3.1
431,974 + -1.6
431,978 - -1.0
431,986 + 0.4
431,988 + -1.2
431,990 + -0.9
431,991 + -1.8
431,991 - -3.5
431,997 + -0.1
432,005 - -1.3
432,005 - -1.0
432,013 + -0.1
432,031 + -1.1
432,044 + -0.8
432,045 + -0.2
432,049 + -1.8
432,049 + -2.3
432,054 + -1.5
432,068 + -1.2
432,070 + -1.0
432,072 - -1.0
432,072 - -2.1
432,073 + -2.6
432,079 + -0.9
432,085 + -0.6
432,089 + -1.2
432,093 + -2.3
432,111 + -2.5
432,150 + -2.3
432,151 + -1.4
432,155 + -0.5
432,160 - -0.1
432,167 + -0.8
432,168 + -2.9
432,174 - 0.2
432,181 - -2.7
432,188 + -0.1
432,191 - -2.7
432,193 - -2.3
432,194 + -0.9
432,197 - -1.1
432,202 + -1.1
432,204 - -2.3
432,209 - 1.1
432,211 - -1.6
432,213 - -0.5
432,222 - 2.0
432,224 + -0.9
432,230 + -2.5
432,231 + -2.4
432,267 - -2.3
432,274 - -1.1
432,290 - -0.4
432,330 - -0.2
432,336 - -0.8
432,336 + -0.9
432,337 + -0.9
432,347 + -0.8
432,351 + -3.2
432,365 - -1.9
432,373 - -1.1
432,378 + -0.3
432,388 + 0.1
432,815 - 8544 mRNA_176 0.20 -2.7
432,819 + 8544 mRNA_176 0.20 0.4
432,830 + 8544 mRNA_176 0.21 -2.0
432,839 - 8544 mRNA_176 0.22 -2.2