Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_154

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_153: 8521 - KOG4826 C-8,7 sterol isomerase, at 383470 to 384442 8521 mRNA_154: 8522 - Hypothetical Protein, at 384974 to 388118 8522 mRNA_155: 8523 - K20069 NECAP1_2 adaptin ear-binding coat-associated protein 1/2, at 388626 to 389791 8523

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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384,076 - 8521 mRNA_153 0.62 0.2
384,106 + 8521 mRNA_153 0.65 -1.0
384,230 + 8521 mRNA_153 0.78 -0.9
384,344 - 8521 mRNA_153 0.90 -2.9
384,476 - -3.4
384,645 - -0.9
384,651 - -0.8
384,654 - -0.8
384,655 - -1.3
384,655 - -0.2
384,672 + 1.4
384,672 - -2.5
384,720 + -1.6
385,298 + 8522 mRNA_154 0.10 -2.0
385,308 - 8522 mRNA_154 0.11 -3.8
385,332 - 8522 mRNA_154 0.11 -2.8
385,595 + 8522 mRNA_154 0.20 -1.3
386,186 + 8522 mRNA_154 0.39 -2.0
386,676 + 8522 mRNA_154 0.54 0.0
386,859 + 8522 mRNA_154 0.60 -1.5
387,095 + 8522 mRNA_154 0.67 -0.1
387,206 - 8522 mRNA_154 0.71 0.2
387,239 - 8522 mRNA_154 0.72 -0.7
387,380 - 8522 mRNA_154 0.77 -4.0
387,820 - -2.5
387,849 + -0.7
387,974 + -0.1
388,137 - -1.1
388,146 + -2.7
388,269 - 2.0
388,279 - -1.4
388,294 + -1.8
388,427 - -2.4
388,445 + -0.1
388,448 - -1.7
388,466 + -1.1
388,570 - -2.4
388,723 + -2.0
388,735 - 1.2
388,746 + 8523 mRNA_155 0.10 -0.8
388,879 + 8523 mRNA_155 0.22 -1.9