Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_150

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_149: 8517 - Hypothetical Protein, at 374872 to 375333 8517 mRNA_150: 8518 - HMMPfam-Beta-glucan synthesis-associated protein (SKN1)-PF03935,SUPERFAMILY--SSF49899, at 375753 to 378108 8518 mRNA_151: 8519 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 379065 to 379994 8519

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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374,759 - -1.0
374,820 + -0.3
374,824 - 0.7
374,942 - 8517 mRNA_149 0.15 -2.9
374,983 + 8517 mRNA_149 0.24 -1.7
375,100 + 8517 mRNA_149 0.49 -3.1
375,131 + 8517 mRNA_149 0.56 -2.3
375,138 + 8517 mRNA_149 0.58 -1.1
375,140 + 8517 mRNA_149 0.58 -1.3
375,249 + 8517 mRNA_149 0.82 0.5
375,258 + 8517 mRNA_149 0.84 -0.4
376,011 + 8518 mRNA_150 0.11 0.1
376,300 - 8518 mRNA_150 0.23 -0.3
376,896 + 8518 mRNA_150 0.49 -2.5
377,138 - 8518 mRNA_150 0.59 -1.7
377,142 - 8518 mRNA_150 0.59 -1.9
377,304 - 8518 mRNA_150 0.66 -0.8
377,442 - 8518 mRNA_150 0.72 -2.3
377,586 + 8518 mRNA_150 0.78 -1.8
377,903 - 1.1
378,023 - -0.5
378,076 - -1.6
378,289 - -1.5
378,324 - -3.4
378,327 + -1.8
378,428 + -1.1
378,443 - -2.7
378,465 + -1.0
378,468 - -2.6
378,500 + 0.4
378,610 - -0.2
378,611 - -2.8
378,613 - 0.0
378,614 + -1.0
378,614 - -1.2
378,616 + 0.2
378,618 + -2.6
378,619 - -1.1
378,624 + -0.9
378,629 - -2.1
378,639 - -1.1
378,658 + -2.6
378,663 - -0.5
378,759 - -1.1
378,763 + -1.9
378,769 + -1.8
378,794 - -3.2
378,797 - -1.9
378,797 - -2.1
378,799 - -0.9
378,800 + 0.2
378,804 + -0.9
378,808 + -0.0
378,812 + -1.6
378,813 - -1.0
378,825 + -1.2
378,827 - -2.1
378,829 - -0.3
378,831 - -2.6
378,875 + -1.2
378,954 - -2.0
378,957 - -1.7
378,959 - -0.8
378,994 + -1.8
378,995 - -3.4