Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_148

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_147: 8515 - K20120 BIN3 bridging integrator 3, at 368683 to 371935 8515 mRNA_148: 8516 - KOG0254 Predicted transporter (major facilitator superfamily), at 372141 to 374463 8516 mRNA_149: 8517 - Hypothetical Protein, at 374872 to 375333 8517

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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371,848 + -1.0
372,102 - -2.4
372,109 - -2.0
372,152 - -1.4
372,245 - -4.3
372,314 + -1.1
372,754 + 8516 mRNA_148 0.26 -1.5
372,778 + 8516 mRNA_148 0.27 -1.7
372,838 - 8516 mRNA_148 0.30 -1.5
372,849 + 8516 mRNA_148 0.30 -2.1
372,850 - 8516 mRNA_148 0.31 -2.0
372,909 + 8516 mRNA_148 0.33 -1.0
372,972 + 8516 mRNA_148 0.36 -3.7
373,158 - 8516 mRNA_148 0.44 0.5
373,213 + 8516 mRNA_148 0.46 0.6
373,313 + 8516 mRNA_148 0.50 0.2
373,440 + 8516 mRNA_148 0.56 -0.6
373,476 - 8516 mRNA_148 0.57 1.7
373,747 - 8516 mRNA_148 0.69 0.0
374,013 - 8516 mRNA_148 0.81 -0.1
374,153 + 8516 mRNA_148 0.87 -3.1
374,189 - 8516 mRNA_148 0.88 0.0
374,197 + 8516 mRNA_148 0.89 0.2
374,342 + -1.4
374,366 - 0.4
374,373 - 0.9
374,381 - -2.9
374,409 - -1.0
374,491 + -0.2
374,495 - -1.0
374,513 - -2.4
374,513 - -1.9
374,521 - -1.6
374,533 + 0.2
374,533 - -1.2
374,541 - -2.6
374,560 + -0.4
374,566 - -1.0
374,570 - -0.4
374,575 + -2.4
374,594 + -2.5
374,594 + 0.2
374,614 + 0.4
374,621 - -3.8
374,627 + -2.2
374,627 + -1.1
374,639 - -1.6
374,659 - -0.4
374,659 - -4.7
374,659 - -1.7
374,663 - -1.4
374,664 + -3.6
374,668 - -2.6
374,671 - -1.1
374,675 + -1.0
374,683 + -2.9
374,684 + 0.3
374,684 + -0.7
374,685 + -2.7
374,687 + -1.9
374,695 - -1.5
374,696 + -3.3
374,719 - -1.8
374,726 + -0.6
374,741 + -1.9
374,759 - -1.0
374,820 + -0.3
374,824 - 0.7
374,942 - 8517 mRNA_149 0.15 -2.9
374,983 + 8517 mRNA_149 0.24 -1.7
375,100 + 8517 mRNA_149 0.49 -3.1
375,131 + 8517 mRNA_149 0.56 -2.3
375,138 + 8517 mRNA_149 0.58 -1.1
375,140 + 8517 mRNA_149 0.58 -1.3
375,249 + 8517 mRNA_149 0.82 0.5
375,258 + 8517 mRNA_149 0.84 -0.4