Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_144

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_143: 8511 - KOG4136 Predicted mitochondrial cholesterol transporter, at 356168 to 357922 8511 mRNA_144: 8512 - K00698 CHS1 chitin synthase, at 358360 to 365387 8512 mRNA_145: 8513 - KOG3299 Uncharacterized conserved protein, at 365672 to 367146 8513

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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357,702 + 8511 mRNA_143 0.87 -0.5
357,818 - -2.7
357,821 - -0.5
357,848 - -1.4
357,851 - -1.6
357,968 + -0.8
357,976 + -1.8
357,977 - -2.8
357,987 - -0.4
357,987 + -0.6
357,994 + -0.9
357,997 - -1.1
358,000 - -1.1
358,000 - -0.4
358,005 - -2.0
358,005 - -1.5
358,006 - -0.3
358,006 + -1.3
358,079 - 0.3
358,123 - -1.9
358,126 - -0.9
358,131 - -1.4
358,133 - 1.8
358,133 - -0.2
358,134 - -2.3
358,141 + -2.2
358,151 + -2.3
358,156 + 2.3
358,157 + -2.1
358,157 + -0.7
358,161 + -0.6
358,254 + 1.7
358,281 - -2.5
358,290 - -1.0
358,314 + -3.1
358,432 - -1.0
358,470 - -2.5
358,513 + -0.7
358,604 - -0.9
358,609 + -1.1
358,627 - -2.8
358,640 + -2.4
358,789 + -0.1
359,212 + 8512 mRNA_144 0.12 -2.0
359,509 - 8512 mRNA_144 0.16 -2.0
359,921 - 8512 mRNA_144 0.22 -2.5
360,046 - 8512 mRNA_144 0.24 1.6
360,355 + 8512 mRNA_144 0.28 0.7
360,470 - 8512 mRNA_144 0.30 -0.9
360,491 + 8512 mRNA_144 0.30 -1.7
360,492 - 8512 mRNA_144 0.30 -2.2
360,657 - 8512 mRNA_144 0.33 -0.5
361,622 + 8512 mRNA_144 0.46 -3.8
361,839 - 8512 mRNA_144 0.50 -0.6
361,956 + 8512 mRNA_144 0.51 -3.2
361,962 + 8512 mRNA_144 0.51 -0.3
362,349 + 8512 mRNA_144 0.57 -2.9
362,496 - 8512 mRNA_144 0.59 -2.3
362,591 - 8512 mRNA_144 0.60 -0.5
362,625 + 8512 mRNA_144 0.61 -1.0
362,930 - 8512 mRNA_144 0.65 -2.3
362,989 - 8512 mRNA_144 0.66 -1.3
362,990 - 8512 mRNA_144 0.66 0.1
363,040 - 8512 mRNA_144 0.67 -2.1
363,099 - 8512 mRNA_144 0.67 -2.8
363,249 - 8512 mRNA_144 0.70 -2.3
363,970 + 8512 mRNA_144 0.80 -1.2
364,014 + 8512 mRNA_144 0.80 -0.5
364,443 + 8512 mRNA_144 0.87 -0.7
364,446 + 8512 mRNA_144 0.87 -1.1
364,591 + 8512 mRNA_144 0.89 -3.1
364,603 + 8512 mRNA_144 0.89 -0.7
365,192 + -1.0
365,197 + -1.1
365,314 + 0.1
365,440 + -0.2
365,465 - -2.6
365,472 - 0.3
365,517 + -0.2
365,617 + -1.0
365,631 + 1.2
365,759 - -0.4
365,759 - -1.6
365,766 + -0.1