Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_142

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_141: 8509 - Hypothetical Protein, at 339978 to 342089 8509 mRNA_142: 8510 - HMMPfam-Protein of unknown function (DUF3712)-PF12505, at 343005 to 355699 8510 mRNA_143: 8511 - KOG4136 Predicted mitochondrial cholesterol transporter, at 356168 to 357922 8511

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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342,072 + -2.8
342,127 + -1.8
342,129 + -1.0
342,131 - -1.9
342,144 + -0.9
342,149 - 1.1
342,167 + -1.0
342,171 - -0.3
342,177 + -0.8
342,187 - -1.6
342,220 - 1.4
342,230 - 0.2
342,230 - -1.4
342,248 - -0.6
342,249 + -0.5
342,250 - -1.8
342,250 + -2.9
342,274 + -0.0
342,293 - -2.3
342,309 - -0.8
342,313 + -2.0
342,317 - -3.4
342,326 - -0.1
342,328 - -3.7
342,328 - -2.3
342,330 - -0.5
342,337 - -2.0
342,342 + -0.4
342,344 + -0.6
342,344 + 0.3
342,353 + -3.5
342,476 + -2.0
342,477 + -2.3
342,487 + -0.5
342,488 - 0.2
342,491 - -1.3
342,493 - -2.7
342,550 - -0.4
342,591 - -1.0
342,611 - -1.6
342,619 - -2.1
342,620 + -1.3
342,626 + 0.0
342,639 - -2.3
342,652 + 1.0
342,742 - -2.1
342,750 - -2.6
342,759 - -0.9
342,761 + -2.6
342,762 + -2.1
342,791 - -2.0
342,793 + -1.2
342,808 - -1.8
342,811 + -1.5
342,884 - -1.5
342,951 + -1.3
342,996 - -0.8
343,129 - -1.7
343,132 - -1.6
343,136 + -1.1
343,148 - 1.1
343,184 - -2.3
343,473 + -2.8
344,027 - -1.7
344,199 - -0.5
344,524 - 8510 mRNA_142 0.12 0.2
344,617 + 8510 mRNA_142 0.13 0.1
344,632 - 8510 mRNA_142 0.13 -3.1
344,680 + 8510 mRNA_142 0.13 -4.1
344,966 + 8510 mRNA_142 0.15 0.2
345,239 - 8510 mRNA_142 0.18 -2.2
345,394 + 8510 mRNA_142 0.19 -0.2
345,419 - 8510 mRNA_142 0.19 -3.4
345,458 + 8510 mRNA_142 0.19 -1.5
345,527 - 8510 mRNA_142 0.20 -1.2
345,687 + 8510 mRNA_142 0.21 -2.4
345,741 - 8510 mRNA_142 0.22 -0.7
345,764 + 8510 mRNA_142 0.22 -0.7
345,784 + 8510 mRNA_142 0.22 -2.7
346,252 - 8510 mRNA_142 0.26 0.9
346,292 + 8510 mRNA_142 0.26 -2.7
346,445 - 8510 mRNA_142 0.27 -2.4
346,527 - 8510 mRNA_142 0.28 -2.4
346,605 + 8510 mRNA_142 0.28 -0.4
346,649 + 8510 mRNA_142 0.29 -2.1
346,705 - 8510 mRNA_142 0.29 -2.1
346,746 + 8510 mRNA_142 0.29 0.1
347,055 - 8510 mRNA_142 0.32 -2.4
347,061 - 8510 mRNA_142 0.32 -0.9
347,068 - 8510 mRNA_142 0.32 -1.5
347,074 + 8510 mRNA_142 0.32 -2.5
347,166 - 8510 mRNA_142 0.33 -2.4
347,192 + 8510 mRNA_142 0.33 -2.5
347,193 + 8510 mRNA_142 0.33 0.2
347,272 - 8510 mRNA_142 0.34 -1.2
347,592 - 8510 mRNA_142 0.36 -2.4
347,635 - 8510 mRNA_142 0.36 -1.6
347,645 + 8510 mRNA_142 0.37 1.8
347,661 - 8510 mRNA_142 0.37 -0.0
347,669 + 8510 mRNA_142 0.37 -1.7
347,788 + 8510 mRNA_142 0.38 -0.4
348,162 + 8510 mRNA_142 0.41 0.2
348,195 - 8510 mRNA_142 0.41 -0.9
348,328 + 8510 mRNA_142 0.42 -3.8
348,450 + 8510 mRNA_142 0.43 -0.8
348,591 - 8510 mRNA_142 0.44 -0.7
348,591 - 8510 mRNA_142 0.44 -1.8
348,724 - 8510 mRNA_142 0.45 -2.2
348,744 + 8510 mRNA_142 0.45 -3.4
348,820 + 8510 mRNA_142 0.46 0.0
348,888 - 8510 mRNA_142 0.46 -1.8
348,903 - 8510 mRNA_142 0.46 -0.9
348,954 - 8510 mRNA_142 0.47 -0.9
349,039 - 8510 mRNA_142 0.48 -2.0
349,057 + 8510 mRNA_142 0.48 -3.4
349,099 + 8510 mRNA_142 0.48 -1.5
349,383 - 8510 mRNA_142 0.50 -2.6
349,439 - 8510 mRNA_142 0.51 -3.5
349,458 + 8510 mRNA_142 0.51 -2.5
349,528 + 8510 mRNA_142 0.51 -2.1
349,848 - 8510 mRNA_142 0.54 -0.9
349,878 - 8510 mRNA_142 0.54 -0.8
349,932 - 8510 mRNA_142 0.55 -0.2
349,936 - 8510 mRNA_142 0.55 -0.8
350,006 - 8510 mRNA_142 0.55 1.2
350,023 + 8510 mRNA_142 0.55 -1.2
350,107 - 8510 mRNA_142 0.56 1.2
350,148 - 8510 mRNA_142 0.56 -1.6
350,205 - 8510 mRNA_142 0.57 -1.0
350,239 - 8510 mRNA_142 0.57 -1.1
350,350 - 8510 mRNA_142 0.58 -0.3
350,384 + 8510 mRNA_142 0.58 -2.5
350,414 - 8510 mRNA_142 0.58 -1.0
350,501 - 8510 mRNA_142 0.59 -1.8
350,618 + 8510 mRNA_142 0.60 -0.6
350,654 - 8510 mRNA_142 0.60 -0.1
350,656 + 8510 mRNA_142 0.60 -2.2
350,731 + 8510 mRNA_142 0.61 -3.6
350,751 - 8510 mRNA_142 0.61 -3.6
350,778 - 8510 mRNA_142 0.61 -3.0
350,818 - 8510 mRNA_142 0.62 -3.1
351,055 + 8510 mRNA_142 0.63 0.0
351,081 - 8510 mRNA_142 0.64 -3.2
351,224 - 8510 mRNA_142 0.65 -2.1
351,247 + 8510 mRNA_142 0.65 -2.1
351,295 + 8510 mRNA_142 0.65 -1.5
351,316 + 8510 mRNA_142 0.65 -1.6
351,346 - 8510 mRNA_142 0.66 -2.5
351,454 - 8510 mRNA_142 0.67 -3.0
351,516 + 8510 mRNA_142 0.67 -1.0
351,574 - 8510 mRNA_142 0.67 -1.9
351,584 - 8510 mRNA_142 0.68 -1.2
351,604 + 8510 mRNA_142 0.68 -0.4
351,640 - 8510 mRNA_142 0.68 1.4
351,660 + 8510 mRNA_142 0.68 -1.1
351,725 + 8510 mRNA_142 0.69 -1.6
351,755 - 8510 mRNA_142 0.69 -0.2
351,796 - 8510 mRNA_142 0.69 -1.6
351,802 + 8510 mRNA_142 0.69 -1.6
351,990 - 8510 mRNA_142 0.71 -3.2
352,000 - 8510 mRNA_142 0.71 0.2
352,021 - 8510 mRNA_142 0.71 -0.2
352,098 - 8510 mRNA_142 0.72 -2.3
352,103 + 8510 mRNA_142 0.72 -2.9
352,106 + 8510 mRNA_142 0.72 -0.6
352,120 + 8510 mRNA_142 0.72 -1.4
352,153 - 8510 mRNA_142 0.72 -0.6
352,299 - 8510 mRNA_142 0.73 -0.2
352,306 + 8510 mRNA_142 0.73 -0.1
352,315 + 8510 mRNA_142 0.73 -1.9
352,557 - 8510 mRNA_142 0.75 0.1
352,593 - 8510 mRNA_142 0.76 -2.2
352,593 - 8510 mRNA_142 0.76 -3.9
352,809 + 8510 mRNA_142 0.77 -1.7
352,867 + 8510 mRNA_142 0.78 -2.5
352,913 - 8510 mRNA_142 0.78 -2.0
352,917 + 8510 mRNA_142 0.78 -0.5
353,043 - 8510 mRNA_142 0.79 -2.7
353,115 - 8510 mRNA_142 0.80 -2.0
353,198 + 8510 mRNA_142 0.80 -1.5
353,310 - 8510 mRNA_142 0.81 -1.5
353,375 + 8510 mRNA_142 0.82 -2.7
353,607 + 8510 mRNA_142 0.84 -0.7
353,613 - 8510 mRNA_142 0.84 -2.6
353,705 + 8510 mRNA_142 0.84 -1.3
353,845 - 8510 mRNA_142 0.85 -0.5
353,855 + 8510 mRNA_142 0.85 -1.8
353,893 - 8510 mRNA_142 0.86 -0.3
353,895 + 8510 mRNA_142 0.86 -1.0
353,899 + 8510 mRNA_142 0.86 -1.6
353,949 - 8510 mRNA_142 0.86 -1.6
354,024 + 8510 mRNA_142 0.87 0.7
354,039 - 8510 mRNA_142 0.87 -1.2
354,076 - 8510 mRNA_142 0.87 -1.3
354,146 + 8510 mRNA_142 0.88 0.5
354,172 + 8510 mRNA_142 0.88 -0.2
354,186 - 8510 mRNA_142 0.88 0.4
354,222 - 8510 mRNA_142 0.88 -2.9
354,230 + 8510 mRNA_142 0.88 -2.2
354,482 + -1.7
354,653 - 0.4
354,729 - -0.2
355,099 - -2.2
355,161 - -0.8
355,374 - -2.0
355,403 - -3.6
355,418 - -1.3
355,442 - -0.1
355,531 + -0.8
355,647 + 0.4
355,755 - -3.1
355,785 + -0.6
355,804 + 0.1
356,035 + -1.6
356,179 - -0.7
356,187 - 0.6
356,537 - 8511 mRNA_143 0.21 -0.8
356,609 - 8511 mRNA_143 0.25 -2.9
356,663 + 8511 mRNA_143 0.28 -2.2
356,682 + 8511 mRNA_143 0.29 -1.2