Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_141

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_140: 8508 - K14571 RIX7, NVL ribosome biogenesis ATPase, at 336645 to 339470 8508 mRNA_141: 8509 - Hypothetical Protein, at 339978 to 342089 8509 mRNA_142: 8510 - HMMPfam-Protein of unknown function (DUF3712)-PF12505, at 343005 to 355699 8510

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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339,578 - -0.4
339,595 - -1.1
339,597 + -1.9
339,606 - -3.2
339,614 - -3.5
339,617 + -3.5
339,617 + -1.5
339,729 + 1.5
339,744 + -3.7
339,767 - -1.6
339,779 - -0.7
339,782 + -1.4
339,786 - -0.5
339,789 - -2.4
339,798 - -0.6
339,798 - -1.3
339,802 - -1.0
339,803 + -2.7
339,804 - -2.2
339,811 + -2.3
339,837 + 0.4
339,837 + -2.8
339,837 - -1.7
339,841 + -1.0
339,844 + -2.2
339,844 + 0.9
339,846 - -1.6
339,851 - -2.9
339,851 + -0.3
339,852 - -2.6
339,861 + -1.0
339,864 + -4.0
339,865 - -0.5
339,885 - -3.4
339,892 + -0.4
339,897 - -1.5
339,900 + -1.3
339,907 + 1.9
339,911 + -1.8
339,913 + -0.3
339,925 - -2.5
340,037 + -0.7
340,081 - -1.1
340,224 - 8509 mRNA_141 0.12 -0.7
340,239 + 8509 mRNA_141 0.12 -1.9
341,286 + 8509 mRNA_141 0.62 -0.2
341,520 - 8509 mRNA_141 0.73 -2.5
341,679 - 8509 mRNA_141 0.81 -2.0
341,809 - 8509 mRNA_141 0.87 -0.6
341,977 - -0.2
342,072 + -2.8
342,127 + -1.8
342,129 + -1.0
342,131 - -1.9
342,144 + -0.9
342,149 - 1.1
342,167 + -1.0
342,171 - -0.3
342,177 + -0.8
342,187 - -1.6
342,220 - 1.4
342,230 - 0.2
342,230 - -1.4
342,248 - -0.6
342,249 + -0.5
342,250 - -1.8
342,250 + -2.9
342,274 + -0.0
342,293 - -2.3
342,309 - -0.8
342,313 + -2.0
342,317 - -3.4
342,326 - -0.1
342,328 - -3.7
342,328 - -2.3
342,330 - -0.5
342,337 - -2.0
342,342 + -0.4
342,344 + -0.6
342,344 + 0.3
342,353 + -3.5
342,476 + -2.0
342,477 + -2.3
342,487 + -0.5
342,488 - 0.2
342,491 - -1.3
342,493 - -2.7
342,550 - -0.4
342,591 - -1.0
342,611 - -1.6
342,619 - -2.1
342,620 + -1.3
342,626 + 0.0
342,639 - -2.3
342,652 + 1.0
342,742 - -2.1
342,750 - -2.6
342,759 - -0.9
342,761 + -2.6
342,762 + -2.1
342,791 - -2.0
342,793 + -1.2
342,808 - -1.8
342,811 + -1.5
342,884 - -1.5
342,951 + -1.3
342,996 - -0.8