Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_136

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_135: 8503 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 323114 to 325275 8503 mRNA_136: 8504 - HMMPfam-Aldose 1-epimerase-PF01263,SUPERFAMILY--SSF74650, at 326050 to 327675 8504 mRNA_137: 8505 - SUPERFAMILY--SSF53474, at 328204 to 331764 8505

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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325,115 - -2.7
325,115 - -1.4
325,291 - -3.4
325,293 + -1.7
325,300 + 0.0
325,301 - -0.4
325,302 + -2.0
325,312 - -1.8
325,317 + -1.1
325,452 - -2.4
325,594 + -0.6
325,595 - -3.7
325,604 - -0.3
325,921 + -4.5
326,033 + -1.1
326,324 + 8504 mRNA_136 0.17 0.0
326,384 - 8504 mRNA_136 0.21 -1.0
326,661 - 8504 mRNA_136 0.38 -2.5
326,837 + 8504 mRNA_136 0.48 -2.6
326,915 + 8504 mRNA_136 0.53 -2.2
326,937 + 8504 mRNA_136 0.55 -0.8
326,970 - 8504 mRNA_136 0.57 0.0
326,997 + 8504 mRNA_136 0.58 -1.1
327,076 + 8504 mRNA_136 0.63 -3.2
327,240 - 8504 mRNA_136 0.73 -2.6
327,253 + 8504 mRNA_136 0.74 -0.3
327,259 + 8504 mRNA_136 0.74 0.9
327,335 - 8504 mRNA_136 0.79 -3.4
327,359 - 8504 mRNA_136 0.81 -2.6
327,504 + 8504 mRNA_136 0.89 -1.0
327,565 - -1.8
327,648 + -0.6
327,652 - -1.3
327,662 - -0.9
327,663 + -2.1
327,667 + -0.6
327,669 - -1.3
327,686 + -3.0
327,819 - -1.0
327,980 + -1.4
328,075 - -1.1
328,101 - -1.9
328,107 - -1.6
328,112 + -2.4
328,261 - -0.6
328,275 + -1.8
328,280 + -1.5