Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_128

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_127: 8495 - K11229 BCK1 mitogen-activated protein kinase kinase kinase, at 304252 to 307207 8495 mRNA_128: 8496 - K11592 DICER1, DCR1 endoribonuclease Dicer, at 307596 to 312359 8496 mRNA_129: 8497 - SUPERFAMILY--SSF56112, at 312995 to 315210 8497

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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306,834 - 8495 mRNA_127 0.87 -3.3
306,877 - 8495 mRNA_127 0.89 -0.1
306,913 + 0.5
307,185 - -1.5
307,205 - -0.9
307,285 + 0.8
307,305 - 2.4
307,482 + -0.6
307,487 + -1.5
307,515 + -2.2
307,600 - -0.2
307,629 + -2.4
307,634 + -2.5
307,719 + -0.1
307,785 - -2.5
307,886 - -2.4
308,051 + -0.4
308,064 - -3.4
308,146 + 8496 mRNA_128 0.12 -3.0
308,397 + 8496 mRNA_128 0.17 -0.2
308,496 + 8496 mRNA_128 0.19 -1.0
308,539 + 8496 mRNA_128 0.20 -1.8
308,683 + 8496 mRNA_128 0.23 -0.1
308,767 - 8496 mRNA_128 0.25 -2.7
308,779 + 8496 mRNA_128 0.25 -0.2
308,896 - 8496 mRNA_128 0.27 -3.2
308,952 + 8496 mRNA_128 0.28 -1.5
308,997 - 8496 mRNA_128 0.29 -0.4
309,133 + 8496 mRNA_128 0.32 -0.8
309,223 - 8496 mRNA_128 0.34 -0.6
309,226 + 8496 mRNA_128 0.34 -1.3
309,382 - 8496 mRNA_128 0.37 -3.9
309,531 + 8496 mRNA_128 0.41 -0.3
309,681 + 8496 mRNA_128 0.44 -1.3
309,702 + 8496 mRNA_128 0.44 -0.0
309,804 + 8496 mRNA_128 0.46 -3.1
309,819 - 8496 mRNA_128 0.47 -1.7
309,952 - 8496 mRNA_128 0.49 0.2
310,080 - 8496 mRNA_128 0.52 -1.2
310,098 - 8496 mRNA_128 0.53 -0.2
310,098 + 8496 mRNA_128 0.53 -1.9
310,236 + 8496 mRNA_128 0.55 -0.6
310,239 - 8496 mRNA_128 0.55 -0.4
310,249 - 8496 mRNA_128 0.56 0.6
310,281 - 8496 mRNA_128 0.56 -1.3
310,386 + 8496 mRNA_128 0.59 -2.3
310,518 + 8496 mRNA_128 0.61 -1.3
310,671 + 8496 mRNA_128 0.65 -1.2
310,722 + 8496 mRNA_128 0.66 -0.4
310,733 + 8496 mRNA_128 0.66 0.6
310,997 + 8496 mRNA_128 0.71 -0.0
311,103 - 8496 mRNA_128 0.74 -4.2
311,253 - 8496 mRNA_128 0.77 -0.7
311,442 + 8496 mRNA_128 0.81 -0.4
311,702 - 8496 mRNA_128 0.86 -0.2
311,728 + 8496 mRNA_128 0.87 -2.9
312,419 - -3.0
312,538 - -2.5
312,542 - -1.6
312,564 - -1.7
312,708 + -1.9
312,811 - -2.2
312,844 - -2.3
312,966 - -1.4
312,983 - -4.0
312,985 + -1.9
312,999 + -2.3
313,176 + -0.5
313,308 + 8497 mRNA_129 0.14 -1.9
313,308 + 8497 mRNA_129 0.14 -1.2