Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_127

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_127: 8495 - K11229 BCK1 mitogen-activated protein kinase kinase kinase, at 304252 to 307207 8495 mRNA_128: 8496 - K11592 DICER1, DCR1 endoribonuclease Dicer, at 307596 to 312359 8496

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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303,311 - -0.1
303,311 - -1.3
303,325 + -1.7
303,439 - -2.3
303,444 + -0.5
303,570 - 0.0
303,840 - -1.1
304,007 - -0.7
304,333 + -0.3
304,439 - -2.0
304,603 + 8495 mRNA_127 0.12 -1.8
304,933 - 8495 mRNA_127 0.23 -0.6
305,053 - 8495 mRNA_127 0.27 -2.3
305,064 + 8495 mRNA_127 0.27 -1.3
305,450 - 8495 mRNA_127 0.41 -0.6
305,468 - 8495 mRNA_127 0.41 -1.3
305,566 - 8495 mRNA_127 0.44 1.0
305,852 + 8495 mRNA_127 0.54 -2.6
306,191 - 8495 mRNA_127 0.66 -1.4
306,337 + 8495 mRNA_127 0.71 -2.0
306,834 - 8495 mRNA_127 0.87 -3.3
306,877 - 8495 mRNA_127 0.89 -0.1
306,913 + 0.5
307,185 - -1.5
307,205 - -0.9
307,285 + 0.8
307,305 - 2.4
307,482 + -0.6
307,487 + -1.5
307,515 + -2.2
307,600 - -0.2
307,629 + -2.4
307,634 + -2.5
307,719 + -0.1
307,785 - -2.5
307,886 - -2.4
308,051 + -0.4
308,064 - -3.4
308,146 + 8496 mRNA_128 0.12 -3.0