Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_114

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_112: 8480 - K10899 RECQL ATP-dependent DNA helicase Q1, at 264157 to 266973 8480 mRNA_113: 8481 - KOG0209 P-type ATPase, at 267088 to 267405 8481 mRNA_114: 8482 - K10862 TDP1 tyrosyl-DNA phosphodiesterase 1, at 267754 to 270066 8482 mRNA_115: 8483 - K14950 ATP13A1 cation-transporting ATPase 13A1, at 270395 to 274744 8483

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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266,777 + -1.8
266,894 - -0.6
266,900 + -3.3
266,900 + -0.2
267,130 - 8481 mRNA_113 0.13 -1.1
267,140 - 8481 mRNA_113 0.16 -2.8
267,314 - 8481 mRNA_113 0.71 -0.5
267,332 + 8481 mRNA_113 0.77 -0.2
267,340 - 8481 mRNA_113 0.79 -0.8
267,482 + -1.3
267,499 + 0.0
267,885 + -4.8
267,886 - -4.4
268,053 - 8482 mRNA_114 0.13 -1.2
268,059 + 8482 mRNA_114 0.13 -1.8
268,554 + 8482 mRNA_114 0.35 -0.8
268,613 - 8482 mRNA_114 0.37 -0.6
268,637 - 8482 mRNA_114 0.38 -3.2
268,643 + 8482 mRNA_114 0.38 0.1
268,648 - 8482 mRNA_114 0.39 -0.9
268,779 - 8482 mRNA_114 0.44 -0.0
268,785 + 8482 mRNA_114 0.45 -0.8
268,794 + 8482 mRNA_114 0.45 -2.3
268,903 - 8482 mRNA_114 0.50 -2.2
268,918 + 8482 mRNA_114 0.50 -1.8
269,061 - 8482 mRNA_114 0.57 -1.4
269,235 - 8482 mRNA_114 0.64 -0.6
269,243 - 8482 mRNA_114 0.64 0.2
269,395 + 8482 mRNA_114 0.71 -2.1
269,467 + 8482 mRNA_114 0.74 -3.3
269,797 - 8482 mRNA_114 0.88 -2.2
269,885 - -3.0
269,917 - -0.3
270,081 - -2.7
270,083 - -1.4
270,230 + -3.6
270,245 + -0.8
270,248 + -1.0
270,256 + -1.6