Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_112

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_111: 8479 - KOG0254 Predicted transporter (major facilitator superfamily), at 260930 to 263760 8479 mRNA_112: 8480 - K10899 RECQL ATP-dependent DNA helicase Q1, at 264157 to 266973 8480 mRNA_113: 8481 - KOG0209 P-type ATPase, at 267088 to 267405 8481 mRNA_114: 8482 - K10862 TDP1 tyrosyl-DNA phosphodiesterase 1, at 267754 to 270066 8482

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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263,436 + 8479 mRNA_111 0.89 -1.0
263,490 + -2.8
263,492 + -1.6
263,503 + -0.6
263,503 + -2.2
263,504 + 0.0
263,507 + -0.6
263,517 - 0.0
263,519 - -1.9
263,539 + -2.3
263,613 + -0.4
263,625 - -1.7
263,641 - -1.2
263,663 + -0.4
263,672 + -1.0
263,683 + -3.4
263,786 + -0.8
263,798 - -0.9
263,822 + -1.5
263,859 + -1.5
263,865 + -1.3
263,875 + -1.6
263,924 - -4.2
264,050 + -5.1
264,089 - -2.8
264,418 + -0.5
264,544 + 8480 mRNA_112 0.14 -2.2
264,554 + 8480 mRNA_112 0.14 -0.1
264,567 + 8480 mRNA_112 0.15 -1.1
264,992 + 8480 mRNA_112 0.30 -2.3
265,001 - 8480 mRNA_112 0.30 0.7
265,110 - 8480 mRNA_112 0.34 -1.1
265,110 - 8480 mRNA_112 0.34 -0.9
265,110 - 8480 mRNA_112 0.34 -2.1
265,110 - 8480 mRNA_112 0.34 -1.6
265,116 + 8480 mRNA_112 0.34 0.3
265,116 + 8480 mRNA_112 0.34 0.7
265,116 + 8480 mRNA_112 0.34 -0.5
265,117 + 8480 mRNA_112 0.34 -1.4
265,132 - 8480 mRNA_112 0.35 -2.3
265,436 + 8480 mRNA_112 0.45 -0.2
265,542 - 8480 mRNA_112 0.49 -2.2
265,586 + 8480 mRNA_112 0.51 -1.7
265,681 - 8480 mRNA_112 0.54 -2.6
265,710 - 8480 mRNA_112 0.55 -2.6
265,868 + 8480 mRNA_112 0.61 -1.5
265,875 - 8480 mRNA_112 0.61 -2.0
265,999 - 8480 mRNA_112 0.65 -0.1
266,128 - 8480 mRNA_112 0.70 -0.9
266,165 - 8480 mRNA_112 0.71 0.2
266,180 + 8480 mRNA_112 0.72 -0.9
266,296 - 8480 mRNA_112 0.76 0.7
266,589 - 8480 mRNA_112 0.86 0.4
266,739 - -2.4
266,777 + -1.8
266,894 - -0.6
266,900 + -3.3
266,900 + -0.2
267,130 - 8481 mRNA_113 0.13 -1.1
267,140 - 8481 mRNA_113 0.16 -2.8
267,314 - 8481 mRNA_113 0.71 -0.5
267,332 + 8481 mRNA_113 0.77 -0.2
267,340 - 8481 mRNA_113 0.79 -0.8
267,482 + -1.3
267,499 + 0.0
267,885 + -4.8
267,886 - -4.4