Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_104

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_103: 8471 - Hypothetical Protein, at 248905 to 249863 8471 mRNA_104: 8472 - Hypothetical Protein, at 250227 to 251681 8472 mRNA_105: 8473 - K08504 BET1 blocked early in transport 1, at 251697 to 252245 8473 mRNA_106: 8474 - K15201 GTP3C3, TFC4 general transcription factor 3C polypeptide 3 (transcription factor C subunit 4), at 252623 to 256756 8474

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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249,257 - 8471 mRNA_103 0.37 -2.7
249,294 + 8471 mRNA_103 0.41 -1.2
249,356 + 8471 mRNA_103 0.47 -2.2
249,626 - 8471 mRNA_103 0.75 -0.4
249,667 + 8471 mRNA_103 0.79 -0.3
249,692 - 8471 mRNA_103 0.82 -0.5
249,740 + 8471 mRNA_103 0.87 0.3
249,768 + -1.9
249,881 - -2.0
249,884 - -0.1
249,912 - -0.6
249,996 - -0.0
250,000 + -4.2
250,001 + -1.0
250,069 - -2.0
250,081 - -1.8
250,090 - -2.5
250,107 + 1.1
250,210 - -1.1
250,230 + 0.4
250,366 - -0.5
250,384 + 8472 mRNA_104 0.11 -2.5
250,458 - 8472 mRNA_104 0.16 -2.1
250,484 + 8472 mRNA_104 0.18 -1.9
250,652 + 8472 mRNA_104 0.29 -0.1
250,657 - 8472 mRNA_104 0.30 -2.6
251,150 + 8472 mRNA_104 0.63 -1.8
251,214 + 8472 mRNA_104 0.68 -1.7
251,362 + 8472 mRNA_104 0.78 -0.1
251,403 + 8472 mRNA_104 0.81 -0.6
251,489 + 8472 mRNA_104 0.87 -2.0
251,552 + -2.7
252,568 - -1.1