Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_102

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_101: 8469 - K18719 NUP82 nucleoporin NUP82, at 243748 to 246867 8469 mRNA_102: 8470 - HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679, at 247531 to 248783 8470 mRNA_103: 8471 - Hypothetical Protein, at 248905 to 249863 8471

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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246,765 + -1.4
246,820 + -1.0
246,821 - -0.6
247,050 + -1.2
247,075 - 1.2
247,094 - 0.2
247,125 + 1.2
247,146 - -2.2
247,147 - -1.2
247,147 + -3.1
247,164 + 0.1
247,165 - -2.7
247,170 + -4.5
247,180 + -2.0
247,762 + 8470 mRNA_102 0.18 -1.3
247,948 - 8470 mRNA_102 0.33 -3.5
248,083 - 8470 mRNA_102 0.44 0.1
248,427 - 8470 mRNA_102 0.72 -2.0
248,432 - 8470 mRNA_102 0.72 -0.7
248,579 + 8470 mRNA_102 0.84 0.7
248,657 + 8470 mRNA_102 0.90 -2.0
248,664 + -2.2
248,677 + -3.7
248,744 + -1.7
248,752 + -1.1
249,020 - 8471 mRNA_103 0.12 -0.0
249,179 - 8471 mRNA_103 0.29 -1.1
249,180 - 8471 mRNA_103 0.29 -1.4
249,257 - 8471 mRNA_103 0.37 -2.7
249,294 + 8471 mRNA_103 0.41 -1.2
249,356 + 8471 mRNA_103 0.47 -2.2
249,626 - 8471 mRNA_103 0.75 -0.4
249,667 + 8471 mRNA_103 0.79 -0.3
249,692 - 8471 mRNA_103 0.82 -0.5
249,740 + 8471 mRNA_103 0.87 0.3
249,768 + -1.9