Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_98

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_97: 8465 - KOG2234 Predicted UDP-galactose transporter, at 229785 to 233167 8465 mRNA_98: 8466 - Hypothetical Protein, at 233874 to 234659 8466 mRNA_99: 8467 - HMMPfam-Fungal cellulose binding domain-PF00734,HMMPfam-GlcNAc-PI de-N-acetylase-PF02585,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-Coagulation factors 5/8 type C domain (FA58C) profile.-PS50022,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF102588,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF57180, at 235594 to 240654 8467

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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232,980 + -3.4
232,995 - -2.6
233,157 - -2.3
233,237 + 1.3
233,256 - -2.3
233,256 - 0.2
233,263 - -2.4
233,276 + -0.8
233,282 - -1.9
233,290 + -3.2
233,290 + -1.1
233,290 + -1.1
233,298 - -1.5
233,298 + -1.8
233,298 - -1.0
233,301 + -2.8
233,301 - -0.5
233,301 - -0.9
233,302 + -1.8
233,315 + -0.7
233,316 - -0.6
233,316 + -0.5
233,317 - -2.3
233,317 - -0.9
233,319 - -0.5
233,320 - -1.2
233,321 + -0.8
233,321 - -0.9
233,321 - -0.4
233,323 - -3.7
233,323 - -2.2
233,324 + -0.1
233,324 + -3.2
233,325 + 1.4
233,325 - -0.9
233,326 + -2.4
233,329 + -0.5
233,332 + -1.2
233,335 + -1.4
233,336 + -3.2
233,337 + -1.2
233,337 + 0.5
233,350 + -1.2
233,350 + 2.4
233,354 - -1.2
233,359 + -0.1
233,365 - -2.0
233,365 - -1.8
233,365 + -2.3
233,375 - -0.3
233,379 + -2.1
233,383 + -0.2
233,387 - -0.6
233,404 + -1.2
233,404 + -3.1
233,408 - -1.5
233,436 - -2.4
233,436 - 0.4
233,436 - -0.5
233,437 - 0.2
233,441 + 1.5
233,442 - -1.8
233,443 - 0.5
233,444 + -3.6
233,446 - -2.7
233,448 - -3.1
233,450 + -1.7
233,451 + -1.7
233,452 + 0.1
233,459 - -0.6
233,488 - -1.7
233,491 - -2.9
233,507 + -0.6
233,512 - 0.1
233,518 - -0.2
233,520 - -1.4
233,523 + -0.7
233,529 - -1.5
233,539 - -2.2
233,541 + 0.0
233,549 + -2.5
233,551 + -0.2
233,559 - -1.3
233,560 + -0.4
233,568 + -0.3
233,571 - -2.8
233,573 + -0.6
233,613 + -1.8
233,657 - -0.2
233,706 + -1.9
233,726 + -2.4
233,851 - -0.4
233,852 + -1.9
233,859 - -0.6
233,865 + 1.5
234,006 - 8466 mRNA_98 0.17 -2.8
234,139 - 8466 mRNA_98 0.34 0.2
234,284 - 8466 mRNA_98 0.52 -1.9
234,293 + 8466 mRNA_98 0.53 -1.5
234,459 + 8466 mRNA_98 0.74 -0.7
234,600 + -2.9
234,613 + -0.2
234,733 - -0.1
234,750 + -1.5
234,765 + -3.1
234,773 - -2.2
234,904 - -0.5
234,909 + 0.5
234,911 - -0.1
234,914 + -1.5
234,915 - -0.8
234,919 + -1.1
234,920 + -1.5
234,923 - -2.7
234,926 + -1.7
234,926 + 0.1
234,927 - -1.6
234,932 - -2.1
234,935 + -1.6
234,936 + -3.1
234,940 - -0.6
234,941 + -2.1
234,941 + -2.7
234,942 + 0.3
234,943 + -1.9
234,970 - -0.4
234,984 - -3.4
234,985 + -0.5
234,991 - -1.2
234,999 + -2.9
234,999 + -0.3
235,005 + -1.8
235,007 - -0.6
235,011 - 1.3
235,013 + -2.4
235,016 - -0.5
235,016 - -1.2
235,019 - -2.2
235,019 + -2.2
235,024 + -1.6
235,026 - -2.0
235,040 - -0.1
235,041 + -2.2
235,048 - -0.1
235,057 - -2.2
235,061 - -0.4
235,062 - -2.2
235,072 - -2.3
235,077 + -0.8
235,078 - -2.1
235,080 - -2.4
235,080 - -1.1
235,081 + -0.1
235,081 + -2.5
235,085 - -0.3
235,085 - -3.4
235,089 - -2.2
235,091 + -0.9
235,092 - -1.3
235,096 + -2.5
235,104 + -0.5
235,135 - -0.8
235,141 - -0.7
235,141 - -1.3
235,144 - -2.3
235,146 + -1.8
235,147 + -1.9
235,147 - -2.8
235,148 - -3.6
235,150 - -3.1
235,152 - -1.5
235,152 + 0.6
235,160 + -0.8
235,165 - -4.6
235,183 + 0.9
235,195 - -1.3
235,206 - 0.4
235,211 + 0.3
235,211 + -0.8
235,212 + -2.9
235,259 - -1.0
235,260 - 2.1
235,276 - -1.8
235,277 - -5.2
235,279 - -2.4
235,280 + -1.7
235,280 - -2.2
235,281 + -1.8
235,281 + -0.1
235,290 - -0.7
235,291 - -1.2
235,292 + 0.4
235,293 - -1.0
235,297 - 1.4
235,299 - -4.5
235,301 - -0.7
235,302 + -0.8
235,308 - -1.6
235,308 + -0.6
235,311 - -1.6
235,314 - 0.2
235,470 + -0.8
235,486 - -1.1
235,495 + -0.7
235,616 - -0.4