Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_94

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_93: 8461 - ProSiteProfiles-BTB domain profile.-PS50097, at 219909 to 221427 8461 mRNA_94: 8462 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 221579 to 223787 8462 mRNA_95: 8463 - K14408 CSTF3, RNA14 cleavage stimulation factor subunit 3, at 224693 to 228325 8463

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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221,592 - -4.5
221,611 + -1.0
221,664 + 1.8
221,749 + -0.3
222,058 + 8462 mRNA_94 0.22 -0.9
222,064 - 8462 mRNA_94 0.22 -0.6
222,611 - 8462 mRNA_94 0.47 0.8
222,772 + 8462 mRNA_94 0.54 -1.0
222,883 - 8462 mRNA_94 0.59 -0.1
223,063 - 8462 mRNA_94 0.67 -0.3
223,344 - 8462 mRNA_94 0.80 -3.2
223,668 - -0.5
223,938 - 0.5
223,947 + -2.2
223,958 - -2.2
223,972 - -0.4
223,985 + -0.2
223,989 + -0.5
223,991 + -1.8
223,993 + -1.0
223,999 - -0.7
224,011 - -0.2
224,011 - -1.1
224,032 - -1.2
224,035 + -1.9
224,084 - -1.0
224,099 + -3.1
224,105 + -1.6
224,111 + -1.4
224,145 - -1.0
224,232 + 0.2
224,240 + -4.7
224,254 - -0.4
224,268 + -0.1
224,275 - -0.3
224,279 + -2.2
224,284 - -1.6
224,296 + -3.4
224,332 - -0.9
224,334 - 0.1
224,339 + -0.5
224,348 - -1.0
224,356 + -0.0
224,356 - -1.8
224,359 + 1.1
224,361 + 0.0
224,362 + -1.7
224,365 - -0.5
224,369 + -2.4
224,369 + -0.4
224,376 - -0.3
224,381 - -1.4
224,383 + -1.1
224,387 + -2.6
224,387 + 0.4
224,393 - -1.4
224,410 - -1.4
224,413 + -0.8
224,448 - -2.5
224,451 + -2.8
224,451 - -1.2
224,453 + -0.5
224,456 + -1.8
224,456 + -2.3
224,458 - -1.9
224,488 + -0.7
224,614 + -0.8
224,720 + -1.4