Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_90

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_89: 8457 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 213359 to 214966 8457 mRNA_90: 8458 - Hypothetical Protein, at 215330 to 215955 8458 mRNA_91: 8459 - HMMPfam-Domain of unknown function (DUF4604)-PF15377, at 216175 to 216894 8459

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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214,384 + 8457 mRNA_89 0.64 -2.1
214,528 - 8457 mRNA_89 0.73 -1.5
214,647 - 8457 mRNA_89 0.80 -1.3
215,100 + -1.5
215,561 - 8458 mRNA_90 0.37 -1.0
215,827 + 8458 mRNA_90 0.79 -0.4
215,848 + 8458 mRNA_90 0.83 0.4
215,849 - 8458 mRNA_90 0.83 0.0
216,122 + -3.0
216,134 - -1.9
216,149 - -2.1
216,253 - 8459 mRNA_91 0.11 0.5
216,567 - 8459 mRNA_91 0.54 -3.3
216,580 + 8459 mRNA_91 0.56 -1.4
216,718 - 8459 mRNA_91 0.75 -1.3
216,739 - 8459 mRNA_91 0.78 -0.9