Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_87

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_86: 8454 - K01452 E3.5.1.41 chitin deacetylase, at 204818 to 206685 8454 mRNA_87: 8455 - BLAST HAP1, N-terminal [Xanthophyllomyces dendrorhous], at 207025 to 210193 8455 mRNA_88: 8456 - K17361 ACOT9 acyl-coenzyme A thioesterase 9, at 210659 to 212272 8456

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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206,088 + 8454 mRNA_86 0.68 0.6
206,167 - 8454 mRNA_86 0.72 -1.5
206,167 - 8454 mRNA_86 0.72 -1.9
206,171 + 8454 mRNA_86 0.72 -0.5
206,231 - 8454 mRNA_86 0.76 -2.6
206,446 - 8454 mRNA_86 0.87 0.1
206,466 - 8454 mRNA_86 0.88 -3.0
206,469 + 8454 mRNA_86 0.88 -0.1
206,642 + -1.9
206,790 + -1.3
206,883 - -0.7
207,767 - 8455 mRNA_87 0.23 -1.6
207,815 + 8455 mRNA_87 0.25 -2.3
207,833 + 8455 mRNA_87 0.25 -1.0
209,433 + 8455 mRNA_87 0.76 -4.5
209,579 - 8455 mRNA_87 0.81 -1.8
209,580 + 8455 mRNA_87 0.81 -3.8
209,692 - 8455 mRNA_87 0.84 0.1
209,713 + 8455 mRNA_87 0.85 -3.4
209,740 - 8455 mRNA_87 0.86 -2.2
209,807 + 8455 mRNA_87 0.88 0.1
209,891 + -0.6
210,158 - -0.7
210,162 + -1.9
210,167 - -1.2
210,173 - -1.6
210,176 + -0.8
210,179 - -1.7
210,179 - -3.5
210,307 + -0.5
210,320 - -0.4
210,321 - 0.5
210,337 + 1.1
210,345 + -1.3
210,368 - -2.3
210,399 - -2.2
210,407 - -0.1
210,418 + -1.6
210,431 + -0.4
210,439 - -1.3
210,449 - -1.7
210,453 - -0.8
210,460 - -1.8
210,476 - -1.2
210,487 + -1.8
210,546 - -2.1
210,568 + -0.3
210,579 + -1.0
210,593 - -1.7
210,600 + -0.8
210,603 - -1.5
210,604 + -1.3
210,610 - -1.1
210,628 + -1.4
210,630 + -2.1
210,637 + -0.7
210,639 - -1.3
210,639 + -1.3
210,645 + -1.8
210,654 - -1.6
210,662 + -2.9
210,663 + -1.1
210,672 + -1.2
210,684 - 1.3
210,772 + -1.3
210,794 + -0.3
210,797 - -1.0
211,078 + 8456 mRNA_88 0.26 -2.4