Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_85

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_84: 8452 - K01522 FHIT bis(5'-adenosyl)-triphosphatase, at 201823 to 202716 8452 mRNA_85: 8453 - BLAST glutamine synthetase [Sanghuangporus baumii], at 203010 to 204516 8453 mRNA_86: 8454 - K01452 E3.5.1.41 chitin deacetylase, at 204818 to 206685 8454

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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202,233 + 8452 mRNA_84 0.46 -3.1
202,687 - -0.1
202,699 - -0.8
202,703 - -0.5
202,705 + -2.1
202,930 + -0.9
203,111 + -0.7
203,119 - 1.1
203,124 - -0.7
203,126 + -2.4
203,403 + 8453 mRNA_85 0.26 -1.1
203,409 + 8453 mRNA_85 0.26 1.9
203,454 - 8453 mRNA_85 0.29 -1.3
203,695 - 8453 mRNA_85 0.45 -1.4
203,771 - 8453 mRNA_85 0.50 -1.1
204,184 - 8453 mRNA_85 0.78 -0.8
204,287 + 8453 mRNA_85 0.85 -0.9
204,288 - 8453 mRNA_85 0.85 -1.7
204,696 - -0.1
204,907 - -0.5
205,019 - 8454 mRNA_86 0.11 -2.1
205,273 - 8454 mRNA_86 0.24 0.1
205,322 + 8454 mRNA_86 0.27 -1.3