Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_82

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_81: 8449 - K12176 COPS2, CSN2, TRIP15 COP9 signalosome complex subunit 2, at 191913 to 194364 8449 mRNA_82: 8450 - KOG0519 Sensory transduction histidine kinase, at 194842 to 197479 8450 mRNA_83: 8451 - Hypothetical Protein, at 197528 to 201315 8451

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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194,112 - 8449 mRNA_81 0.90 -2.3
194,118 - 8449 mRNA_81 0.90 -1.0
194,119 - -0.6
194,129 + -1.8
194,145 + -0.4
194,431 - -0.1
194,435 - -1.7
194,573 - -2.1
194,719 + 0.7
194,722 - -3.7
194,723 + -2.0
194,723 - -0.5
194,739 + -2.1
194,755 + -1.8
194,890 - -1.7
194,890 - -1.0
194,901 + 0.6
195,049 - -0.5
195,329 + 8450 mRNA_82 0.18 -2.2
195,332 - 8450 mRNA_82 0.19 -3.6
195,355 + 8450 mRNA_82 0.19 -0.7
195,401 - 8450 mRNA_82 0.21 1.2
195,502 + 8450 mRNA_82 0.25 -0.2
195,603 - 8450 mRNA_82 0.29 0.0
195,656 + 8450 mRNA_82 0.31 -2.0
195,833 + 8450 mRNA_82 0.38 0.4
195,918 - 8450 mRNA_82 0.41 -0.8
195,941 - 8450 mRNA_82 0.42 -1.7
196,053 + 8450 mRNA_82 0.46 -3.6
196,230 + 8450 mRNA_82 0.53 -0.8
196,234 - 8450 mRNA_82 0.53 0.9
196,271 - 8450 mRNA_82 0.54 -0.7
196,365 - 8450 mRNA_82 0.58 -1.6
196,625 - 8450 mRNA_82 0.68 -1.9
196,798 - 8450 mRNA_82 0.74 -1.1
196,939 - 8450 mRNA_82 0.79 -1.7
196,940 - 8450 mRNA_82 0.80 -2.9
196,940 + 8450 mRNA_82 0.80 -0.9
196,952 - 8450 mRNA_82 0.80 -0.9
196,987 - 8450 mRNA_82 0.81 -1.3
197,665 - -0.6
198,073 + 8451 mRNA_83 0.14 -2.0
198,124 - 8451 mRNA_83 0.16 -0.4
198,350 + 8451 mRNA_83 0.22 -2.2