Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_75

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_74: 8442 - KOG3600 Thyroid hormone receptor-associated protein complex, subunit TRAP240, at 174089 to 180350 8442 mRNA_75: 8443 - K00606 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 180761 to 182108 8443 mRNA_76: 8444 - K18164 NDUFAF7 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7, at 182247 to 184330 8444

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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180,123 - -1.8
180,125 - -1.2
180,135 + -1.6
180,143 - -1.6
180,149 + -3.0
180,430 + -1.6
180,431 - -1.1
180,435 - -3.2
180,437 - -0.7
180,448 - -1.8
180,455 + -2.0
180,586 - -1.3
180,721 + -3.2
180,893 - -1.7
180,894 + -1.5
181,040 - 8443 mRNA_75 0.21 -1.8
181,658 - 8443 mRNA_75 0.67 -2.1
181,762 + 8443 mRNA_75 0.74 -2.0
181,763 - 8443 mRNA_75 0.74 -3.7
181,767 - 8443 mRNA_75 0.75 -1.1
181,788 - 8443 mRNA_75 0.76 -2.6
181,914 - 8443 mRNA_75 0.86 -2.5
181,916 + 8443 mRNA_75 0.86 -1.2
181,929 - 8443 mRNA_75 0.87 -3.1
182,051 + 0.5
182,063 - -0.8
182,067 - -2.3
182,089 + 1.7
182,214 + -0.3