Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_68

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_67: 8435 - K05864 PPID, CYPD peptidyl-prolyl isomerase D, at 156273 to 158120 8435 mRNA_68: 8436 - K12599 SKI2, SKIV2L antiviral helicase SKI2, at 158685 to 163751 8436 mRNA_69: 8437 - K03029 PSMD4, RPN10 26S proteasome regulatory subunit N10, at 163948 to 165826 8437

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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157,835 - 8435 mRNA_67 0.85 -3.8
157,966 - -0.7
158,031 + -0.8
158,054 + -1.0
158,069 - -2.0
158,176 + -1.8
158,177 - 0.9
158,179 - -2.0
158,183 - 1.2
158,192 - -1.6
158,193 + -1.9
158,193 + -1.3
158,196 - 0.3
158,296 + -1.6
158,320 - 0.7
158,333 + -4.0
158,341 - -2.2
158,347 - -1.2
158,387 + -0.9
158,636 + -0.9
158,639 - -0.5
158,650 - -2.6
158,678 + -1.7
158,949 - -1.4
159,101 - 0.8
159,853 - 8436 mRNA_68 0.23 1.2
161,440 - 8436 mRNA_68 0.54 -1.2
162,603 + 8436 mRNA_68 0.77 0.6
162,916 - 8436 mRNA_68 0.84 -0.3
163,919 + 0.9
163,920 + -0.7
164,051 - 1.7
164,314 + 8437 mRNA_69 0.19 -0.8
164,349 - 8437 mRNA_69 0.21 -1.2