Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_67

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_66: 8434 - K15118 SLC25A38 solute carrier family 25, member 38, at 154666 to 156000 8434 mRNA_67: 8435 - K05864 PPID, CYPD peptidyl-prolyl isomerase D, at 156273 to 158120 8435 mRNA_68: 8436 - K12599 SKI2, SKIV2L antiviral helicase SKI2, at 158685 to 163751 8436

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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155,507 + 8434 mRNA_66 0.63 -0.1
155,513 - 8434 mRNA_66 0.63 -1.2
155,516 + 8434 mRNA_66 0.64 0.2
155,629 + 8434 mRNA_66 0.72 1.0
155,729 + 8434 mRNA_66 0.80 -0.8
156,004 - -3.8
156,035 + -0.4
156,173 + -1.7
156,304 + -0.9
156,319 + -1.6
156,334 - -0.3
156,617 + 8435 mRNA_67 0.19 -3.2
157,257 - 8435 mRNA_67 0.53 -2.6
157,262 - 8435 mRNA_67 0.54 0.9
157,297 - 8435 mRNA_67 0.55 -1.3
157,309 + 8435 mRNA_67 0.56 -1.3
157,309 + 8435 mRNA_67 0.56 -0.1
157,453 + 8435 mRNA_67 0.64 -2.3
157,467 - 8435 mRNA_67 0.65 1.3
157,482 - 8435 mRNA_67 0.65 -1.1
157,655 + 8435 mRNA_67 0.75 -2.4
157,835 - 8435 mRNA_67 0.85 -3.8
157,966 - -0.7
158,031 + -0.8
158,054 + -1.0
158,069 - -2.0
158,176 + -1.8
158,177 - 0.9
158,179 - -2.0
158,183 - 1.2
158,192 - -1.6
158,193 + -1.9
158,193 + -1.3
158,196 - 0.3
158,296 + -1.6
158,320 - 0.7
158,333 + -4.0
158,341 - -2.2
158,347 - -1.2
158,387 + -0.9
158,636 + -0.9
158,639 - -0.5
158,650 - -2.6
158,678 + -1.7
158,949 - -1.4
159,101 - 0.8