Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_47

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_46: 8414 - HMMPfam-Protein of unknown function (DUF3292)-PF11696, at 111074 to 114249 8414 mRNA_47: 8415 - HMMPfam-Serine hydrolase (FSH1)-PF03959,SUPERFAMILY--SSF53474, at 114589 to 115599 8415 mRNA_48: 8416 - HMMPfam-Serine hydrolase (FSH1)-PF03959,SUPERFAMILY--SSF53474, at 116348 to 117395 8416

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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113,624 + 8414 mRNA_46 0.80 -1.7
113,665 - 8414 mRNA_46 0.82 -1.5
113,686 - 8414 mRNA_46 0.82 -3.8
113,715 - 8414 mRNA_46 0.83 0.8
113,851 + 8414 mRNA_46 0.87 -2.3
113,858 + 8414 mRNA_46 0.88 -3.4
114,191 + -2.4
114,192 + -0.4
114,197 + -2.7
114,265 + -1.6
114,279 + -2.0
114,605 + -1.8
114,855 - 8415 mRNA_47 0.26 -1.5
114,932 + 8415 mRNA_47 0.34 -1.8
114,935 - 8415 mRNA_47 0.34 -2.9
115,004 + 8415 mRNA_47 0.41 -1.6
115,174 - 8415 mRNA_47 0.58 0.3
115,308 + 8415 mRNA_47 0.71 -1.4
115,372 - 8415 mRNA_47 0.77 -0.6
115,609 - -0.5
115,729 + -1.3
115,808 - -2.9
115,835 + -2.0
115,866 - -1.2
115,920 - -0.9
115,921 + -0.9
115,922 - -1.9
115,931 + -3.0
115,945 + -0.7
115,954 - -1.4
115,969 + -1.0
115,972 + -0.8
115,980 - -2.4
115,988 + 1.0
115,994 + -3.1
115,995 - -0.6
115,998 + 1.3
116,003 + -2.4
116,030 + -0.3
116,037 - -2.9
116,040 + -2.3
116,047 - -1.8
116,052 + -4.0
116,081 + -1.7
116,081 + 0.2
116,154 - -0.2
116,154 + -2.5
116,186 + -0.3
116,192 - 0.1
116,198 + -2.1
116,199 + -0.4
116,231 - -0.3
116,235 + 1.0
116,242 + -0.3
116,270 + -1.4
116,376 - -2.5
116,402 - -2.1
116,467 - 8416 mRNA_48 0.11 -0.8
116,564 - 8416 mRNA_48 0.21 -0.6