Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_46

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_45: 8413 - SUPERFAMILY--SSF51445, at 108511 to 110701 8413 mRNA_46: 8414 - HMMPfam-Protein of unknown function (DUF3292)-PF11696, at 111074 to 114249 8414 mRNA_47: 8415 - HMMPfam-Serine hydrolase (FSH1)-PF03959,SUPERFAMILY--SSF53474, at 114589 to 115599 8415

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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110,418 - 8413 mRNA_45 0.87 -1.2
110,441 - 8413 mRNA_45 0.88 -1.5
110,580 + -2.5
110,591 - 1.4
110,608 + -0.1
110,618 + -2.5
110,727 - -2.1
110,735 - -1.9
110,737 - -1.3
110,741 - -1.6
110,773 + 0.5
110,777 + -1.7
110,788 + -1.2
110,790 + -0.4
110,796 - -3.2
110,799 - -3.6
110,806 + 1.0
110,806 - -0.8
110,809 + -2.1
110,817 - -1.5
110,819 - -1.2
110,821 - -3.0
110,831 + 1.8
110,855 + -3.7
110,916 + -2.6
110,934 - -1.9
110,936 - -1.6
110,948 + -0.5
110,962 + -0.9
110,963 + -0.5
110,965 + 1.7
110,972 - -0.9
110,973 + -0.2
110,978 - -1.2
110,980 - 0.4
110,982 + -1.1
110,991 - -1.7
111,000 + -1.5
111,122 - -2.2
111,122 - -3.2
111,123 + 0.2
111,139 - -1.0
111,259 - -0.1
111,645 - 8414 mRNA_46 0.18 1.1
111,901 + 8414 mRNA_46 0.26 -3.0
112,062 - 8414 mRNA_46 0.31 1.2
112,099 - 8414 mRNA_46 0.32 -0.1
112,181 - 8414 mRNA_46 0.35 -0.2
112,191 + 8414 mRNA_46 0.35 -2.5
112,332 + 8414 mRNA_46 0.40 -3.3
112,499 + 8414 mRNA_46 0.45 -2.7
112,504 - 8414 mRNA_46 0.45 -2.3
112,513 - 8414 mRNA_46 0.45 -1.5
112,520 - 8414 mRNA_46 0.46 -1.7
112,560 - 8414 mRNA_46 0.47 -1.8
112,600 - 8414 mRNA_46 0.48 -3.2
112,921 + 8414 mRNA_46 0.58 -0.2
112,938 - 8414 mRNA_46 0.59 -2.8
113,031 - 8414 mRNA_46 0.62 2.0
113,122 - 8414 mRNA_46 0.64 -0.9
113,215 - 8414 mRNA_46 0.67 -0.4
113,271 + 8414 mRNA_46 0.69 -2.9
113,281 - 8414 mRNA_46 0.69 0.4
113,293 - 8414 mRNA_46 0.70 0.1
113,368 + 8414 mRNA_46 0.72 0.1
113,390 - 8414 mRNA_46 0.73 -0.2
113,392 - 8414 mRNA_46 0.73 -2.4
113,474 + 8414 mRNA_46 0.76 -1.8
113,517 - 8414 mRNA_46 0.77 2.0
113,580 - 8414 mRNA_46 0.79 -2.9
113,624 + 8414 mRNA_46 0.80 -1.7
113,665 - 8414 mRNA_46 0.82 -1.5
113,686 - 8414 mRNA_46 0.82 -3.8
113,715 - 8414 mRNA_46 0.83 0.8
113,851 + 8414 mRNA_46 0.87 -2.3
113,858 + 8414 mRNA_46 0.88 -3.4
114,191 + -2.4
114,192 + -0.4
114,197 + -2.7
114,265 + -1.6
114,279 + -2.0
114,605 + -1.8
114,855 - 8415 mRNA_47 0.26 -1.5
114,932 + 8415 mRNA_47 0.34 -1.8
114,935 - 8415 mRNA_47 0.34 -2.9
115,004 + 8415 mRNA_47 0.41 -1.6
115,174 - 8415 mRNA_47 0.58 0.3