Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_45

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_44: 8412 - Hypothetical Protein, at 106197 to 108340 8412 mRNA_45: 8413 - SUPERFAMILY--SSF51445, at 108511 to 110701 8413 mRNA_46: 8414 - HMMPfam-Protein of unknown function (DUF3292)-PF11696, at 111074 to 114249 8414

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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107,709 + 8412 mRNA_44 0.71 -1.6
107,857 - 8412 mRNA_44 0.77 -0.6
108,138 - -1.6
108,418 - -3.9
108,987 - 8413 mRNA_45 0.22 -4.5
109,483 - 8413 mRNA_45 0.44 0.0
109,754 + 8413 mRNA_45 0.57 -0.5
109,802 - 8413 mRNA_45 0.59 0.5
109,879 + 8413 mRNA_45 0.62 -0.1
109,885 + 8413 mRNA_45 0.63 -1.2
109,894 + 8413 mRNA_45 0.63 -0.4
110,418 - 8413 mRNA_45 0.87 -1.2
110,441 - 8413 mRNA_45 0.88 -1.5
110,580 + -2.5
110,591 - 1.4
110,608 + -0.1
110,618 + -2.5
110,727 - -2.1
110,735 - -1.9
110,737 - -1.3
110,741 - -1.6
110,773 + 0.5
110,777 + -1.7
110,788 + -1.2
110,790 + -0.4
110,796 - -3.2
110,799 - -3.6
110,806 + 1.0
110,806 - -0.8
110,809 + -2.1
110,817 - -1.5
110,819 - -1.2
110,821 - -3.0
110,831 + 1.8
110,855 + -3.7
110,916 + -2.6
110,934 - -1.9
110,936 - -1.6
110,948 + -0.5
110,962 + -0.9
110,963 + -0.5
110,965 + 1.7
110,972 - -0.9
110,973 + -0.2
110,978 - -1.2
110,980 - 0.4
110,982 + -1.1
110,991 - -1.7
111,000 + -1.5
111,122 - -2.2
111,122 - -3.2
111,123 + 0.2
111,139 - -1.0
111,259 - -0.1
111,645 - 8414 mRNA_46 0.18 1.1