Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_40

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_39: 8407 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SUPERFAMILY--SSF54695, at 94865 to 95759 8407 mRNA_40: 8408 - Hypothetical Protein, at 96128 to 97227 8408 mRNA_41: 8409 - K03125 TAF1 transcription initiation factor TFIID subunit 1, at 97555 to 101757 8409

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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95,176 - 8407 mRNA_39 0.35 -1.6
95,240 - 8407 mRNA_39 0.42 -2.4
95,274 - 8407 mRNA_39 0.46 -1.8
95,475 - 8407 mRNA_39 0.68 -1.0
95,528 - 8407 mRNA_39 0.74 -3.8
95,566 - 8407 mRNA_39 0.78 -1.1
95,645 - 8407 mRNA_39 0.87 -1.1
95,648 + 8407 mRNA_39 0.87 -0.3
95,650 - 8407 mRNA_39 0.88 -1.6
95,707 + -1.8
95,713 - -2.8
95,750 + -1.2
95,770 + -0.8
95,809 - -2.5
95,818 - 0.8
95,823 + -2.2
96,060 + -1.9
96,091 - -3.5
96,091 + -0.8
96,109 + -1.1
96,270 - 8408 mRNA_40 0.13 -1.8
96,357 - 8408 mRNA_40 0.21 -1.8
96,366 + 8408 mRNA_40 0.22 -0.5
96,378 + 8408 mRNA_40 0.23 -1.0
96,410 - 8408 mRNA_40 0.26 -0.7
96,462 + 8408 mRNA_40 0.30 -0.8
96,560 + 8408 mRNA_40 0.39 -0.9
96,621 - 8408 mRNA_40 0.45 -1.7
96,674 - 8408 mRNA_40 0.50 -1.1
96,754 - 8408 mRNA_40 0.57 0.5
96,912 - 8408 mRNA_40 0.71 -1.8
97,093 - 8408 mRNA_40 0.88 -1.1
97,224 + 0.1