Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_36

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_35: 8403 - KOG1611 Predicted short chain-type dehydrogenase, at 84983 to 86013 8403 mRNA_36: 8404 - K00694 bcsA cellulose synthase (UDP-forming), at 86184 to 90147 8404 mRNA_37: 8405 - HMMPfam-Variant SH3 domain-PF14604,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 90908 to 93083 8405

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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85,238 + 8403 mRNA_35 0.25 -2.0
85,339 - 8403 mRNA_35 0.35 -2.2
85,394 + 8403 mRNA_35 0.40 -0.1
85,502 + 8403 mRNA_35 0.50 -0.1
85,520 + 8403 mRNA_35 0.52 -1.2
85,661 - 8403 mRNA_35 0.66 -3.2
85,670 + 8403 mRNA_35 0.67 -1.0
85,827 - 8403 mRNA_35 0.82 0.7
85,833 + 8403 mRNA_35 0.82 0.0
85,943 - -2.1
85,947 + -2.3
85,985 - -0.1
86,078 - -1.6
86,113 - 0.2
86,148 - -2.2
86,211 - -2.2
86,266 + -1.6
86,389 - -2.3
86,443 + -0.9
86,511 - 0.3
86,538 + -1.6
86,598 + 8404 mRNA_36 0.10 -0.5
86,798 + 8404 mRNA_36 0.15 -0.1
86,883 + 8404 mRNA_36 0.18 -1.9
87,119 - 8404 mRNA_36 0.24 -1.4
87,663 + 8404 mRNA_36 0.37 -2.4
87,704 + 8404 mRNA_36 0.38 -0.6
87,753 - 8404 mRNA_36 0.40 -3.1
88,231 - 8404 mRNA_36 0.52 -0.2
88,320 + 8404 mRNA_36 0.54 0.4
88,335 + 8404 mRNA_36 0.54 -1.4
88,374 + 8404 mRNA_36 0.55 -2.3
88,453 - 8404 mRNA_36 0.57 -0.9
88,465 + 8404 mRNA_36 0.58 -0.8
88,727 + 8404 mRNA_36 0.64 -1.8
88,912 - 8404 mRNA_36 0.69 -1.4
89,310 + 8404 mRNA_36 0.79 -0.9
89,544 + 8404 mRNA_36 0.85 -1.9
89,642 + 8404 mRNA_36 0.87 -2.1
89,656 + 8404 mRNA_36 0.88 -1.8
89,887 + -0.6
90,062 + -0.1
90,107 - -1.3
90,219 - 0.2
90,236 - 0.1
90,348 + -2.0
90,354 - -0.1
90,359 + -2.1
90,360 + 2.1
90,362 + -0.6
90,372 - -1.9
90,378 - 0.3
90,378 - -1.1
90,390 + -2.1
90,391 + 0.3
90,392 + -0.2
90,393 + -1.0
90,393 - -0.9
90,394 + -0.7
90,395 + -1.1
90,395 + -3.8
90,399 - -1.0
90,401 - -0.8
90,401 + -1.7
90,403 - -0.7
90,403 - -4.2
90,408 + -0.2
90,408 - -0.7
90,409 + -0.8
90,409 - -3.3
90,411 + -0.1
90,411 + -0.1
90,413 + -3.2
90,420 - -1.5
90,422 - -0.5
90,423 + -1.1
90,424 + -0.5
90,425 + -1.2
90,425 + -0.3
90,428 - -2.1
90,437 - -3.0
90,439 - -0.8
90,439 - -1.4
90,439 - -0.8
90,440 - 1.1
90,441 - -2.7
90,442 + -0.7
90,443 - -0.6
90,453 + -0.0
90,454 - -2.3
90,455 - -2.2
90,462 + -2.8
90,471 + -0.9
90,472 - -1.7
90,480 - -1.1
90,496 - -2.5
90,498 - -0.6
90,499 + -3.1
90,501 - -3.4
90,502 + -2.4
90,503 - -3.1
90,503 - 0.3
90,516 - -2.9
90,517 + -2.2
90,517 + -1.4
90,528 + -0.9
90,547 + -1.9
90,556 + -2.0
90,565 - -0.5
90,567 - -0.7
90,574 - -1.2
90,575 + -3.3
90,579 - -1.1
90,587 + -2.6
90,589 - -0.7
90,590 + -2.0
90,591 + -3.0
90,594 - 0.9
90,603 + -0.1
90,620 - -2.5
90,621 - -2.5
90,625 - -2.5
90,629 - 0.0
90,630 + -0.1
90,630 + -2.5
90,630 - -1.4
90,633 - -0.9
90,633 + -0.2
90,636 - 0.5
90,639 - -2.7
90,641 - 0.7
90,643 + -3.7
90,648 - -2.8
90,649 - -0.9
90,652 + -1.7
90,652 - -0.1
90,655 - -0.6
90,660 + -0.2
90,660 - -0.1
90,662 - -1.3
90,667 - -2.9
90,667 - -2.9
90,668 + -0.7
90,670 + 0.2
90,673 - -0.5
90,674 + -2.9
90,682 + -2.9
90,686 - -1.9
90,686 - 0.7
90,694 - -1.9
90,696 + -0.6
90,700 - -3.8
90,701 + -0.7
90,707 + -0.4
90,720 - -0.8
90,809 + -1.4
90,811 - -2.6
90,819 - -1.3
90,839 + -0.3
90,840 + 0.1
90,850 + -1.3
90,861 + -1.6
91,102 + 0.1
91,107 - -0.6
91,127 - 8405 mRNA_37 0.10 -2.5
91,128 + 8405 mRNA_37 0.10 -1.2