Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_33

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_32: 8400 - HMMPfam-Pre-rRNA-processing protein TSR2-PF10273, at 78127 to 78849 8400 mRNA_33: 8401 - HMMPfam-Myosin-binding striated muscle assembly central-PF11701,SUPERFAMILY--SSF48371, at 79205 to 81384 8401 mRNA_34: 8402 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 81530 to 84325 8402

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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78,998 - -1.8
79,008 - -3.2
79,008 + -1.1
79,024 - -1.1
79,034 + 0.3
79,036 + -2.6
79,041 - -0.5
79,042 + -2.2
79,043 + -0.5
79,190 + -3.3
79,324 + -2.5
79,480 + 8401 mRNA_33 0.13 -3.6
79,728 - 8401 mRNA_33 0.24 -2.3
80,085 - 8401 mRNA_33 0.40 0.5
80,249 + 8401 mRNA_33 0.48 -3.4
80,367 - 8401 mRNA_33 0.53 -0.9
80,374 - 8401 mRNA_33 0.54 0.7
80,616 - 8401 mRNA_33 0.65 0.5
80,626 + 8401 mRNA_33 0.65 -2.7
80,666 - 8401 mRNA_33 0.67 -1.4
80,977 + 8401 mRNA_33 0.81 -0.9
81,101 + 8401 mRNA_33 0.87 -2.2
81,113 + 8401 mRNA_33 0.88 -2.4
81,114 - 8401 mRNA_33 0.88 -0.1
81,221 - 0.7
81,232 - -0.1
81,251 - -0.6
81,260 - -2.0
81,275 - -2.7
81,278 + -2.2
81,407 - -2.7
82,155 + 8402 mRNA_34 0.22 -1.1